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Figure 2 | BMC Genetics

Figure 2

From: Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data

Figure 2

Properties of discovered SNPs. (A) SNP distribution relative to annotated genes. CTCF, H3K4me3 and RNAPII refer to SNPs discovered from ChIP-seq data. (B) Distribution of GM12878 CTCF SNPs around ChIP peaks. 10 bp bins were generated from the highest points of peaks and the number of SNPs was counted in each bin. SNP counts were added up across all peaks in every bin and plotted. (C) Distribution of conservation scores around GM12878 CTCF peaks. Conservation scores were assigned to each of the 10 bp bins and the average was plotted. (D) Distribution of GM12878 RNAPII SNPs and (E) phastCons conservation scores around GM12878 RNAPII ChIP peaks.

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