Linkage disequilibrium and inbreeding estimation in Spanish Churra sheep

BMC Genomic Data

Table 3 Block structure per chromosome

Chromosome	Number of blocks	Total block length (Kb)	% of Chromosome length in blocks	Min. block length (Kb)	Max. block length (Kb)	Number of SNPs in blocks	% of SNPs in blocks
1	257	5,440.86	1.97	1.74	265.59	569	11.41
2	252	11,148.79	4.46	3.92	1,262.79	634	13.56
3	200	5,321.47	2.38	2.79	385.36	464	11.14
4	103	3,273.46	2.76	2.89	228.94	244	10.86
5	86	2,023.86	1.88	0.07	325.55	191	9.66
6	115	2,705.20	2.31	3.72	225.92	257	11.74
7	95	1,753.56	1.75	4.06	158.77	204	10.81
8	88	2,256.32	2.49	2.62	262.30	198	11.53
9	109	2,886.37	3.04	3.66	472.64	249	13.56
10	79	5,231.93	6.26	2.46	1,075.88	210	13.79
11	41	779.45	1.25	5.76	177.74	88	9.14
12	80	1,154.64	1.46	1.95	182.06	165	11.33
13	71	1,725.72	2.08	3.75	175.94	161	11.48
14	34	648.62	1.04	0.04	120.50	76	7.92
15	62	1,716.25	2.12	2.13	248.80	140	10.19
16	52	980.30	1.37	2.46	134.49	113	8.61
17	42	1,225.16	1.69	2.99	231.71	103	8.74
18	50	854.06	1.25	5.08	152.75	107	8.98
19	51	978.44	1.61	5.73	316.69	105	10.17
20	33	660.86	1.31	6.33	155.29	72	7.91
21	34	521.40	1.08	2.84	116.56	73	10.08
22	48	870.01	1.72	2.63	200.82	104	11.04
23	39	1,009.87	1.61	6.71	328.76	85	9.10
24	19	453.21	1.09	4.38	233.82	40	6.69
25	37	738.85	1.68	6.76	205.07	82	9.69
26	22	366.91	0.83	0.92	128.69	46	6.07
All	2,099	56,725.56	2.32	0.04	1,262.79	4,780	10.92

The number of blocks, total, minimum and maximum block length, percentage of the sequence covered by blocks, number and percentage of SNPs in blocks on a per chromosome basis are reported in this table. Values obtained across the genome are also shown.

ISSN: 2730-6844