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Table 6 Results of the association analyses of the SNPs that are contained in the PorcineSNP60 BeadChip and mapped within candidate genes underlying the QTL effects in SSC1, 4, 5, 9 and 14

From: Genome-wide linkage analysis of QTL for growth and body composition employing the PorcineSNP60 BeadChip

Gene

SNP

Minor alelle frequency

g (SE)

P-value

QTL in SSC1 for SW (Whole population)

  

PTPRD

ASGA0005690

0.27

−0.01 (0.06)

0.988

 

INRA0005932

0

--

--

QTL in SSC4 for BFT75 (BC1 generation)

  

AGL

ASGA0022526

0.19

1.15 (0.51)

0.025

 

ASGA0022527

0.04

--

--

 

ALGA0028692

0.27

0.87 (0.22)

1.8 x 10-4

VCAM1

DIAS0002972

0.18

0.84 (0.39)

0.033

QTL in SSC5 for BFTS (F3 + BC2 generations)

  

VDR

DIAS0001339

0.43

−0.01 (0.07)

0.881

 

MARC0076697

0

--

--

QTL in SSC9 for SW (F3 + BC2 generations)

  

FASL

DBUN0000737

0.33

−0.03 (0.07)

0.622

 

H3GA0028097

0

--

--

QTL in SSC14 for BFT75 (BC1)

 

CYP2E1

UMB10000045

0.14

−0.12 (0.39)

0.755