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Table 2 Summary of genetic diversity measures across African and commercial populations

From: Gene diversity, agroecological structure and introgression patterns among village chicken populations across North, West and Central Africa

sample

He

Ho

MNA

Ar (N > 10)

Fis

LEHWE

LDHWE

BEN-Atl

0.534

0.512

4.64

4.06

0.041

  

BEN-Lit

0.588

0.613

4.41

-

−0.044

  

BEN-Cou

0.574

0.606

3.82

-

−0.060

  

BEN-Mon

0.562

0.558

3.95

-

0.008

  

BEN-Oué

0.550

0.591

3.55

-

−0.081

  

BEN-Bor

0.548

0.540

5.14

3.95

0.013

  

BEN-Don

0.526

0.503

4.14

3.81

0.046

  

CIV-Agn

0.605

0.595

4.82

4.40

0.018

  

CIV-SCo

0.638

0.616

5.32

4.84

0.036

 

1

CIV-Lag

0.612

0.574

4.77

4.40

0.064

  

CIV-Lac

0.591

0.586

6.00

4.54

0.009

  

CIV-NCo

0.553

0.528

5.05

4.30

0.045

 

1

GHA-Ash

0.565

0.561

3.64

-

0.009

  

GHA-Eas

0.619

0.625

5.09

4.33

−0.010

  

GHA-Wes

0.612

0.583

5.14

4.32

0.048

 

1

GHA-Nor

0.571

0.551

4.95

4.25

0.035

  

GHA-UEa

0.510

0.503

3.77

3.58

0.014

  

GHA-UWe

0.561

0.553

4.18

4.18

0.015

1

 

MAR-Mek

0.665

0.579

5.36

4.48

0.131*

 

2

CAM-Cen

0.635

0.637

5.46

4.57

−0.003

  

CAM-Est

0.634

0.664

3.36

-

−0.052

  

CAM-Sud

0.632

0.647

5.55

4.54

−0.024

  

CAM-ONO

0.632

0.613

4.73

4.21

0.032

 

1

BS-C

0.499

0.512

3.09

2.92

−0.025

  

BS-D

0.481

0.475

3.55

3.13

0.012

  

BD-B

0.482

0.484

3.14

2.92

−0.003

  

WEL-A

0.297

0.295

2.14

2.04

0.008

  

BEL-C

0.406

0.360

2.95

2.77

0.115*

 

2

  1. He: non-biased expected heterozygosity; Ho: observed heterozygosity; MNA: mean number of alleles per locus; Ar (N > 10): allelic richness computed for populations with more than 10 individuals genotyped for each locus; Fis*: significant value after sequential bonferroni correction; LD number of Loci in heterozygote Deficiency/Excess, after sequential Bonferroni correction.