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Table 2 Indexes of splicing regulatory factors

From: Categorization of 77 dystrophinexons into 5 groups by a decision tree using indexes of splicing regulatory factors as decision markers

No Features Symbol Reference
1 5' splice site strength (Shapiro score) SH5'ss [31]
2 3' splice site strength (Shapiro score) SH3'ss [31]
3 5' spice site strength (maximum entropy) ME5'ss [32]
4 3' spice site strength (maximum entropy) ME3'ss [32]
5 5' splice site strength (information content/Ri) Ri5'ss [33]
6 3' splice site strength (information content/Ri) Ri3'ss [33]
7 U1 SnRNA binding free energy FE [35]
8 ESE density (RESCUE ESE/RESE) RESE-D [36]
9 ESE density (PESE) PESE-D [38]
10 ESS density (FAS-ESS/FESS) FESS-D [37]
11 ESS density (PESS) PESS-D [38]
12 SF2/ASF number SF2/ASF-N [39]
13 SF2/ASF (IgM/BRCA1) number SF2/ASF (IgM, BRCA1)-N [39]
14 SRp40 number SRp40-N [39]
15 SC35 number SC35-N [39]
16 SRp55 number SRp55-N [39]
17 SF2/ASF score density SF2/ASF-D [39]
18 SF2/ASF (IgM/BRCA1) score density SF2/ASF (IgM-BRCA1)-D [39]
19 SC35 score density SC35-D [39]
20 SRp40 score density SRp40-D [39]
21 SRp55 score density SRp55-D [39]
22 5' splice site pre-mRNA secondary structure free energy RSS5'ss [40]
23 3' splice site pre-mRNA secondary structure free energy RSS3'ss [40]
24 5' splice site GC content GC5'ss [40]
25 3' splice site GC content GC3'ss [40]
26 The number of nucleotides in exon SIZE