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Table 4 Primers of the 20 SSR loci used in the analysis

From: Assessment of the genetic diversity of the Tunisian citrus rootstock germplasm

Locus name

EMBL

Accession No.

Primer sequence Forward

Primer sequence Reverse

Repeat motifs

Ta

(°C)

mCrCIR02A09

FR677568

ACAGAAGGTAGTATTTTAGGG

TTGTTTGGATGGGAAG

(GA)9

55

mCrCIR03C08

FR677576

CAGAGACAGCCAAGAGA

GCTTCTTACATTCCTCAAA

(GA)16

55

mCrCIR02D04B

FR677564

CTCTCTTTCCCCATTAGA

AGCAAACCCCACAAC

(GT)10(GA)7

50

mCrCIR02D09

FR677569

AATGATGAGGGTAAAGATG

ACCCATCACAAAACAGA

(GA)10

55

mCrCIR03D12a

FR677577

GCCATAAGCCCTTTCT

CCCACAACCATCACC

(GT)10(GA)6

50

mCrCIR03G05

FR677578

CCACACAGGCAGACA

CCTTGGAGGAGCTTTAC

(GAAA)3(GA)11

50

mCrCIR02G12

FR677575

AAACCGAAATACAAGAGTG

TCCACAAACAATACAACG

(GA)14

55

MEST121

DY275927

TCCCTATCATCGGCAACTTC

CAATAATGTTAGGCTGGATGGA

(TAA)9

55

MEST431

DY285140

GAGCTCAAAACAATAGCCGC

CATACCTCCCCGTCCATCTA

(CAG)7

55

MEST458

DY283417

CCCCCTCTTTTTCTCTTCCA

TTCTGGGCTGGTAGGTTCAG

(TC)12

55

mCrCIR01C06

AJ567393

GGACCACAACAAAGACAG

TGGAGACACAAAGAAGAA

(GA)9

50

mCrCIR01C07

AJ567394

GTCACTCACTCTCGCTCTTG

TTGCTAGCTGCTTTAACTTT

(CT)10

55

mCrCIR01D06a

AM489734

GATCAAAACATTATTCCAA

TTTTTCATCAACAAGACTG

(CA)12

50

mCrCIR01E02

AM489735

TGAATGGTACGGGAAATGC

CAGGGTCGGTGGAGAGGAT

(GA)16

55

mCrCIR01F04a

AM489736

AAGCATTTAGGGAGGGTCACT

TGCTGCTGCTGTTGTTGTTCT

(CT)13CC(CT)7

55

mCrCIR01F08a

AM489737

ATGAGCTAAAGAGAAGAGG

GGACTCAACACAACACAA

(GAAT)6

50

mCrCIR01H05

AJ567401

AAAACAACCAAAAGGACAAGATT

TTCAAACTAAACAAACCAACTCG

(GA)9

55

mCrCIR06B05

AM489744

GAACGATGGAATGAAGTG

ATGTTGATTACGAGACCTT

(GA)26

55

mCrCIR07D06

FR677581

CCTTTTCACAGTTTGCTAT

TCAATTCCTCTAGTGTGTGT

(TAAT)4N(TG)8(GA)11

55

mCrCIR07D07

AM489748

GCTGATGATACGCACGAACC

CACAACGCCAAAAACGACTC

(GA)10

55

  1. Ta: annealing temperature. MEST: Marker selected from Clementine Expressed Sequence Tag, mCrCIR: Microsatellite selected from genomic sequences of C. reticulata at CIRAD