Quantitative Trait Locus (QTL) meta-analysis and comparative genomics for candidate gene prediction in perennial ryegrass (Lolium perenne L.)

Table 3 Genetic locations of candidate gene-derived markers and QTLs on the p150/112 reference genetic map. Chr denotes chromosome

Candidate rice ortholocus		Reference	Prerennial ryegrass QTL	LG	Reference	Anchor marker
Gene	Physical location (Chr.: Mb)		QTL			Marker	Physical location^*a(Chr.: Mb)
EUI1	Chr. 5: 23.7 Mb	[51]	qPlantheight_C3_1	1	[13]	PSR162	Chr. 5: 25.5 Mb
PDT	Chr. 7: 30 Mb	[52]	qCP-Sep-03-f2	2	[46]	CDO418	Chr. 7: 27.6 Mb
			qCP-Sep-03-m2	2	[46]	CDO59	Chr. 7: 26.4 Mb
			qCP-04-m2	2	[46]	RZ395	Chr. 7: 24.6 Mb
			qCP-04-f2	2	[46]	CDO405	Chr. 7: 27.6 Mb
			qCP-su-gh-01_2	2	[14]	CDO405	Chr. 7: 27.6 Mb
OsGA3ox2	Chr. 1: 4 Mb	[53]	qFG-04-f3.2	3	[45]	CDO460	Chr. 1: 1.4 Mb
DGL1 ^*b	Chr. 1: 28.2 Mb	[54]	qLeafwidth_C3_3	3	[13]	CDO345	Chr. 1: 37.9 Mb
GA20ox-2 ^*b	Chr. 1: 30 Mb	[55]	qPlantheight_C3_3	3	[13]	CDO345	Chr. 1: 37.9 Mb
Ph1 ^*b	Chr. 1: 38.3 Mb	[56]	qTillersize_C3_3	3	[13]	CDO345	Chr. 1: 37.9 Mb
			qLET_WSCF2_3	3	[44]	CDO345	Chr. 1: 37.9 Mb
			qFG-03-m3	3	[45]	CDO345	Chr. 1: 37.9 Mb
Pi37	Chr. 1: 33.1 Mb	[57]	qPMR1_INF1_VrnA	3	[40]	LRGA4	Chr. 1:20.6 Mb
			qCrownrust04_WI2_MFB3	3	[41]	RZ444	Chr. 1:29.7 Mb
OsPIPK 1	Chr. 3: 28.2 Mb	[58]	qHD_PxA_4	4	[29]	CDO795	Chr. 3: 30.1 Mb
			qHD_WSC_4	4	[15]	CDO795	Chr. 3: 30.1 Mb
			qHD_C3_4	4	[15]	CDO795	Chr. 3: 30.1 Mb
Pib	Chr. 2: 35.1 Mb	[59]	qGLSGG9gc_1_MFA_6	6	[34]	CDO686	Chr. 2: 31.8 Mb
			qGLSGG9gc_2_MFA_6	6	[34]	CDO686	Chr. 2: 31.8 Mb
D3	Chr. 6: 2.8 Mb	[60]	qLL_p150/112_7	7	[15]	Hd3a	Chr. 6: 2.9 Mb
			qLL_WSC_7	7	[15]	Hd3a	Chr. 6: 2.9 Mb

*^a Location of candidate orthologue in rice.
*^b Candidate genes for Leafwidth_C3_3, Plantheight_C3_3, Tillersize_C3_3, LET_WSCF2_3 and qFG-03-m3.

ISSN: 2730-6844