Table 4 Bias * of genomic predictions from different methods, obtained for five traits of a mice population
From: A comparison of statistical methods for genomic selection in a mice population
Splitting | Method | Trait | ||||
|---|---|---|---|---|---|---|
W6W | WGS | BL | %CD8+ | CD4+/CD8+ | ||
Within | POL | −4% | 1% | −1% | 1% | 1% |
emBayesB | −62% | 24% | 2% | −42% | −52% | |
RR_GBLUP | −9% | 8% | 13% | 2% | 4% | |
SS_BY | −18% | 22% | - | 5% | 5% | |
SS_ABS | −35% | 4% | −30% | 5% | 17% | |
RKHS | −1% | 1% | −1% | 1% | 2% | |
SVR | −4% | 3% | −6% | 5% | 4% | |
BayesCpi | −26% | 66% | 81% | −568% | −91% | |
BayesC | −43% | 263% | 69% | −397% | −420% | |
LASSO | −85% | 53% | 2% | −73% | −73% | |
RF | −1% | 1% | 1% | 0% | 1% | |
Across | POL | - | - | - | - | - |
emBayesB | −51% | 5% | 3% | −58% | −87% | |
RR_GBLUP | −31% | 8% | 8% | −2% | 14% | |
SS_BY | −44% | 18% | - | −1% | 17% | |
SS_ABS | −54% | −7% | −38% | −16% | 31% | |
RKHS | −23% | 4% | −4% | 9% | 10% | |
SVR | −24% | 6% | −8% | 14% | 10% | |
BayesCpi | −15% | 83% | 46% | −719% | −196% | |
BayesC | 23% | 280% | 115% | −239% | −359% | |
LASSO | −116% | 40% | 7% | −70% | −98% | |
RF | −13% | 2% | −1% | 5% | 5% | |