From: UPDG: U tilities package for data analysis of P ooled D NA G WAS
Correction methoda | Allele frequency difference (Pools - Individual samples) | Absolute valuesb | % of SNPs with over-estimated allele frequencyc | |||
---|---|---|---|---|---|---|
 | Sample group | Mean difference | SD | Mean difference | SD |  |
1 | Case | 0.0726 | 0.0414 | 0.0728 | 0.0411 | 99.1 |
2 | Case | 0.0725 | 0.0419 | 0.0725 | 0.0418 | 99.1 |
3 | Case | 0.0477 | 0.0435 | 0.0487 | 0.0423 | 94.3 |
4 | Case | 0.0690 | 0.0511 | 0.0740 | 0.0435 | 92.6 |
1 | Control | 0.0627 | 0.0467 | 0.0630 | 0.0463 | 99.1 |
2 | Control | 0.0625 | 0.0465 | 0.0626 | 0.0463 | 99.1 |
3 | Control | 0.0352 | 0.0512 | 0.0389 | 0.0484 | 85.7 |
4 | Control | 0.0591 | 0.0500 | 0.0637 | 0.0438 | 93.5 |
1 | Case - Control | 0.0099 | 0.0276 | 0.0246 | 0.0158 | 70.4 |
2 | Case - Control | 0.0100 | 0.0275 | 0.0247 | 0.0157 | 69.4 |
3 | Case - Control | 0.0125 | 0.0328 | 0.0298 | 0.0184 | 68.6 |
4 | Case - Control | 0.0099 | 0.0293 | 0.0253 | 0.0176 | 69.4 |