From: Association of an ACSL1 gene variant with polyunsaturated fatty acids in bovine skeletal muscle
SNP ID relative to coding sequence* | Gene region | Variation relative to reference sequence | Position on NW_001494406.2 (Btau4.2) | Position on NW_003104605.1 (UMD_3.1) | Allele frequency | SNP accession number (dbSNP, NCBI ss#) |
---|---|---|---|---|---|---|
c.-569_570del AC | Promoter | Indel TG | 1918795 | 389858 | Not analyzed | ss469271165 |
c.-224_225del GG | Promoter | Indel (C)5-7 | 1918451 | 389615 | Not analyzed | ss469271166 |
c.-196G>A | Promoter | C>T | 1918422 | 3894586 | Not analyzed | ss469271167 |
c.-167G>C | Promoter | C>G | 1918393 | 3894557 | Not analyzed | ss469271168 |
c.-151G>C | Promoter | C>G | 1918377 | 3894541 | Not analyzed | ss469271169 |
c.-122G>A | Promoter | C>T | 1918348 | 3894512 | 0.67 (G)/0.33 (A) | ss469271170 |
c.481-233A>G | Intron 5 | T>C | 1876389 | 3852106 | 0.73 (A)/0.27 (G) | ss469271171 |
c.516C>G | Exon 6 | G>C | 1876121 | 3852284 | 0.57 (C)/0.43 (G) | ss469271172 |
c.580+114C>G | Intron 6 | G>C | 1875943 | 3852552 | 0.33 (C)/0.67 (G) | ss469271173 |
c.584A>G | Exon 7 | T>C | 1875838 | 3852001 | 0.07 (G)/0.94 (A) | ss469271174 |
c.845-58T>G | Intron 9 | A>C | 1871919 | 3848082 | 0.75 (T)/0.21 (G)5 | ss469271175 |
c.1267-100C>T | Intron 13 | G>A | 1864210 | 3840373 | 0.24 (T)/0.76 (C) | ss469271176 |
c.1525-131C>T | Intron 16 | G>A | 1859370 | 3835533 | Not analyzed | ss469271177 |
c.1938T>G | Exon 20 | A>C | Not annotated | 3831586 | 0.75 (T)/0.25 (G) | ss469271178 |
c.1959+56G>A | Intron 20 | C>T | Not annotated | 3831509 | 0.24 (A)/0.76 (G) | ss469271179 |
c.2099+1023del A | 3'UTR | Indel A | 1853870 | 3829944 | Not analyzed | ss469271180 |
c.2099+1030 C>A | 3'UTR | C>A | 1853863 | 3829937 | Not analyzed | ss469271181 |
c.2099+1032 A>C | 3'UTR | A>C | 1853861 | 3829935 | Not analyzed | ss469271182 |
c.2099+1034 C>A | 3'UTR | C>A | 1853859 | 3829933 | Not analyzed | ss469271183 |