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Table 2 Interaction analyses results

From: Progeny-testing of full-sibs IBD in a SSC2 QTL region highlights epistatic interactions for fatness traits in pigs

   Sires 072866 and 072868 Sires 084026 and 085830
Tested marker Allele Nb off. Effect P-val Nb off. Effect P-val
  1 69 -0.51 0.308 58 -1.45 0.009
SSC1 (SW2512) 2 81 -0.27 0.544 - - -
  3 - - - 67 -1.27 0.010
  1 85 -1.49 0.001 87 -1.86 <0.0001
SSC3 (SW1436) 2 93 0.37 0.372 - - -
  3 - - - 70 0.60 0.242
  1 62 -1.07 0.050 67 -1.49 0.007
SSC6 (SW1055) 2 55 -0.19 0.719 - - -
  3 - - - 91 -1.27 0.005
  1 64 -0.77 0.186 - - -
SSC8 (SW205) 2 77 -0.34 0.414 57 -0.74 0.147
  3 - - - 65 -1.57 0.003
  1 69 -0.54 0.286 73 -1.69 0.001
SSC13 (SW207) 2 66 0.32 0.540 - - -
  3 - - - 67 -1.01 0.046
  1 93 -0.95 0.025 82 -1.60 0.001
SSC13 (SW1550) 2 80 0.01 0.980 - - -
  3 - - - 67 -1.10 0.024
  1 83 0.09 0.833 45 -1.28 0.024
  2 85 -0.66 0.164 - - -
SSC14 (SW245) 3 - - - 76 -1.23 0.009
  4 - - - 36 -1.67 0.059
  1 74 -0.56 0.220 72 -1.39 0.009
SSC16
(MCSeq5008)
2 70 -0.48 0.350 - - -
  3 - - - 64 -1.31 0.012
  1. Interactions were tested between eight microsatellites (representing eight candidate regions) at position 66 cM on SSC2. QTL effects αSSC2(kg) given as (MS - LW) and the associated p-values are shown. In bold are the significant p-values obtained for sires 072866 and 072868 for which no QTL was detected on SSC2
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