MHC polymorphism and disease resistance to vibrio anguillarum in 8 families of half-smooth tongue sole (Cynoglossus semilaevis)

Du, Min; Chen, Song-lin; Liu, Yan-hong; Liu, Yang; Yang, Jing-feng

doi:10.1186/1471-2156-12-78

Table 2 Distribution of SNP sites within exon2 of MHC IIB allelic sequences of half-smooth tongue sole

From: MHC polymorphism and disease resistance to vibrio anguillarum in 8 families of half-smooth tongue sole (Cynoglossus semilaevis)

Serial number	Position	Base type	Allele no. (n = 88)	Frequency	Serial number	Position	Base type	Allele no. (n = 88)	Frequency
1	6	T	87	0.989	39	104-106	ATC	51	0.580
		C	1	0.011			ATT	1	0.011
2	9-11	CTA	52	0.591			ATG	1	0.011
		GTA	1	0.011			CAG	35	0.398
		GAG	35	0.398	40	109-111	TCG	84	0.955
3	12	C	17	0.193			TCA	2	0.023
		T	34	0.386			CCG	1	0.011
		A	7	0.080			TTG	1	0.011
		G	30	0.341	41	124-126	GGA	49	0.557
4	13	A	82	0.932			AGA	12	0.136
		T	5	0.057			GAG	27	0.307
		G	1	0.011	42	130	A	56	0.636
5	14-15	AT	30	0.341			T	32	0.364
		AC	1	0.011	43	143	C	2	0.023
		TT	55	0.625			T	86	0.977
		CT	2	0.023	44	148-149	AT	49	0.557
6	16	C	32	0.364			TA	8	0.091
		T	20	0.227			TT	31	0.352
		A	36	0.409	45	156-157	CC	1	0.011
7	18	G	39	0.443			TA	24	0.273
		A	49	0.557			TC	63	0.716
8	19	T	33	0.375	46	163	C	87	0.989
		G	20	0.227			T	1	0.011
		C	30	0.341	47	168-169	AG	71	0.807
		A	5	0.057			GC	17	0.193
9	20	G	46	0.523	48	170-172	ATG	75	0.852
		A	34	0.386			ATT	9	0.102
		C	8	0.091			TTG	3	0.034
10	21-23	ACA	53	0.602			ACT	1	0.011
		GTG	35	0.398	49	174	G	1	0.011
11	24	G	74	0.841			A	87	0.989
		A	14	0.159	50	177-178	GA	86	0.977
12	25	A	35	0.398			AA	1	0.011
		G	31	0.352			GG	1	0.011
		T	19	0.216	51	181-183	GTC	80	0.909
		C	3	0.034			ATC	7	0.080
13	26	T	5	0.057			GAA	1	0.011
		C	83	0.943	52	193	C	24	0.273
14	28-29	CC	52	0.591			T	64	0.727
		CA	1	0.011	53	196	A	62	0.705
		GA	35	0.398			G	26	0.295
15	32-33	CG	35	0.398	54	198	A	69	0.784
		TG	1	0.011			G	19	0.216
		TC	52	0.591	55	199-200	GG	40	0.455
16	38-39	CA	52	0.591			GT	18	0.205
		CG	1	0.011			TG	8	0.091
		TA	35	0.398			CG	22	0.25
17	40-41	AC	51	0.580	56	205	A	67	0.761
		GC	1	0.011			C	20	0.227
		AT	35	0.398			G	1	0.011
		CT	1	0.011	57	207-208	GA	62	0.705
18	44	C	36	0.409			AC	3	0.034
		T	52	0.591			GG	8	0.091
19	47-49	AAA	52	0.591			GC	5	0.057
		AAG	1	0.011	58	210-211	AA	86	0.977
		TAA	19	0.216			GA	1	0.011
		TGA	16	0.182			AT	1	0.011
20	51	G	53	0.602	59	218	G	87	0.989
		C	35	0.398			T	1	0.011
21	53	G	36	0.409	60	220	A	87	0.989
		C	52	0.591			G	1	0.011
22	55-56	AC	69	0.784	61	226-227	TG	47	0.534
		AT	18	0.205			TA	40	0.455
		GC	1	0.011			CG	1	0.011
23	58	A	87	0.989	62	228	A	50	0.568
		G	1	0.011			C	29	0.330
24	63-64	GC	51	0.580			T	9	0.102
		GT	1	0.011	63	229	A	82	0.932
		GA	1	0.011			T	2	0.023
		CA	35	0.398			G	4	0.045
25	67	A	68	0.773	64	231-234	AAC	61	0.693
		T	20	0.227			ACT	2	0.022
26	72	C	13	0.148			CAC	20	0.227
		G	40	0.455			AGC	5	0.057
		T	35	0.398	65	237-238	GG	79	0.898
27	74	C	40	0.455			GA	5	0.057
		G	48	0.545			AG	4	0.045
28	78	C	38	0.432	66	240-241	AA	10	0.114
		T	50	0.568			AT	54	0.614
29	80	C	35	0.398			CT	23	0.261
		T	53	0.602			GT	1	0.011
30	82-83	AC	52	0.591	67	242-243	TG	46	0.523
		AT	35	0.398			TT	19	0.216
		GT	1	0.011			GG	23	0.261
31	84-85	TT	30	0.341	68	245-246	CT	68	0.773
		CT	23	0.261			CA	19	0.216
		TA	35	0.398			AT	1	0.011
32	87	A	87	0.989	69	248	T	2	0.023
		G	1	0.011			C	86	0.977
33	90	A	86	0.977	70	250-253	ACCA	10	0.114
		G	2	0.023			ACGC	64	0.727
34	92-94	ACT	52	0.591			AGCC	1	0.011
		GAG	36	0.409			GGAC	12	0.136
35	96	G	35	0.398			ACGG	1	0.011
		A	53	0.602	71	254-256	TGC	70	0.796
36	98-99	GA	42	0.477			TGG	12	0.136
		GT	11	0.125			GTT	6	0.068
		AT	35	0.398	72	256-258	TT	12	0.136
37	100	C	1	0.011			TC	63	0.716
		A	38	0.432			CC	2	0.023
		T	49	0.557			TG	11	0.125
38	101-102	CA	34	0.386
		CG	16	0.182
		GA	3	0.034
		TG	31	0.352
		TA	4	0.046

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