Table 1 Name, pre-amplification forward and reverse primers, extension primers and nucleotide calls for the 45 SNP loci used in this study

TC006

GGGTATAGGGTTTGATCAAC

TTGAGGACCTTTTACGCAAC

AAGACCTGTGAAGAA

G

T

TC008

GGTTGATTGATTTTGCCTCC

TGGAGTGCAAAAGTCCATCG

GCCTCCATAGGCTCC

C

T

TC011

ATGAAAGACTCTTAAGTCG

GATGTCTCACAAATCTCGCC

ACTCTTAAGTCGACAGAC

T

A

TC012

GCAAACAGGACCGTGTTGAA

ACAAGATGGAACGGGTAGAG

CGTACACCTTGATCTTGCC

C

G

TC016

GTGAGTTTTGTCTCAAACGG

ATTGCCAAGCCAAGTAAGCG

TTTGTCTCAAACGGTTCACCCA

G

A

TC017

ATGCTTGGCAATTTGGAGTG

TTTACCTCCAGGACATTGGC

GCAATTTGGAGTGTTCTGA

C

T

TC033

TCCCCAAGAGCAATAATCGG

GATCGAAGTTTTGGTAGGTC

TGAGAAAATCTCCTACTTACC

C

G

TC040

GAGGAAGTAGAGCCAATAGC

ACCACGATGGAAGTTGCTTG

CCAATAGCAACCATCA

C

T

TC043

GCATTGAGGATTGTGGCTTC

TGAGGAAAAATCACGTCCGC

ATTGTGGCTTCACACCTA

C

T

TC045

ATTGGGATCCGACCCTGTTG

GGTTTGAACACCTGAAATGG

GGGATCTGGTTGTC

T

C

TC046

GGGAAAACGGGCTCAAGATG

AAAGCTGCCCTTGTAAACGC

ACAAATTGGCTTTGCTTGG

C

T

TC051

TCAAGCGAAACACCACCATC

TCGTACACCTGAATGGTGAC

CTTCACCACCTACTC

C

T

TC060

GAGGACCCATTTTTCCACAC

TCTTTTACAAGCACTCCTC

GAAGTCATCACACACG

G

A

TC073

ACTTGGATGTGGTGTCCTTG

CCAACACCAATGTCACCATC

GTGGTGTCCTTGGCCTCA

T

A

TC074

TTGCTCAAGTCAACCATGCC

GCAACCAGTTGATAGCTTCC

TCCTGTATTTTGCCT

C

G

TC077

GTCTCAAACGCGAATGCAAG

TTGCTTGGTTCGAGGACATC

AGAAGCCACGGCCACGTTTTC

T

C

TC078

GGGTACTGTGGTGTCGATTC

AAGAGGACAGCAAATGGGAC

TGTCGATTCTCCTCGG

C

G

TC084

GCAAATTCTGGTCCACCATC

ATGCACGTTTATGGCTACCG

TTTATCCGTACTGGTCTC

T

C

TC085

GAAGCCGACATCAAAATGAC

AAGGACAAATCTCCCATTGC

CATCTGAACCAGAAATCCATC

C

A

TC099

TAGCAATCTTCGGTCACCAC

CAGCCCATTATGATTGCTCG

GGGTTTCCACGGGATA

T

C

TC102

GCGTCAACGATGTTGAGAAC

TGGTGCCCATACATGAGTTC

GAACTTCATGGCCTTGAAGAT

A

T

TC103

GAGATCTCAGGAGAGTTGC

AATGAGGAATCTTCTCTGGC

GAGTTGCAACATCTC

T

C

TC104

GCTTACTTCATTCACGCACC

GAGACTTTGAGCGTCTGAAC

CCATTATTTAGTCTATCCAAGA

A

G

TC106

CATTTCTTCTCCCACACCAG

AATGAGAAGCAATGCTCCTG

ACGGGGATCTTGAC

C

T

TC107

CCTTCCCATAAAGGTCAATC

TGGAAAGAAACGGGAAGTGC

AAAGGTCAATCAATGACT

C

A

TC111

AAGTGTCTCTGCGAGTGCTG

TTCGAATGATGGGATCCGTG

CAACCTTCGTCGGATGTTCCCGG

C

G

TC112

TGGCTGCCTTTGAAGAGAAC

GAAACATCAAAGCAAGCAGG

AGAGAACATCACCTAA

C

T

TC118

TCAAGGACACCATCAAGAGC

TCCGGACAAGATGTTCTTGC

AGAAGGACGCCTCCTA

T

C

TC124

ACACCAAACCATTGAGTGGC

ATATGTAGAAGACCGAGAGC

TACCCTGTTGATGCGA

C

T

TC125

TTGTTGGACTTGATGCCTCG

GCTCGTATTGCTCGATCTTG

ATGTGGACAAATTGAA

G

A

TC128

TGTCGTATCTCGTCCTCTTC

AGAACACGAGAAGAAATTC

CTCGTCCTCTTCTTGGAATC

G

A

TC130

ACGTTCGTTTGTTAAGGCGG

GAACATTGCTGACAACGGAG

GTTTGTTAAGGCGGTAACTG

G

A

TC152

CGCCCCAGACGACGACGA

ATGCATTCGCGAAAGGCCTG

CTCCCTCAAAGCCTC

A

G

TC155

TTGGATCAGATCCAGCGGT

GCGAGGATTTGCAAGTACAC

AGATCCAGCGGTGCCTTAAACC

A

C

TC156

AATTTGATCTAGGAGCAACG

GCATTCAGTTCCAGTTTGAG

GGAGCAACGTTGCATTG

C

T

TC157

CAAGTTCCTGGCCAAGAAAG

TCCATGAACATGTCCATCT

GGGAACGATGATTTGGAA

G

C

TC162

GAAGATGCTTGAGTGGATGG

TCGGCGGAGGTGTACACTTT

AAGGCAATCTCCAGGAT

T

C

TC167

TGGCATCTTGATGTTTTCGC

ACTGAGGAAGGATCTTGAGG

AGGTTGGTCATTGT

T

C

TC169

GTAGCCCCTCAAGGTTATGC

TCACGCTTGGCAACATGGAG

AAGGGCCAATATGTGGC

T

C

TC171

ATGTCTCAAAACGGCCTTCC

TCGAGGAAGTTTCGTTGCAC

GCCTTCCGGATCAGCGGTA

T

C

TC180

AATGTCTCGCAAGAGCTGG

TGGTGGTTACCTTTCGAAAT

GAGCTGGACCCAGACAC

T

C

TC184

CTCCCGAATATCATGAAGGC

GGGTCCTCAACGGAAATAAC

AACCCTCAGATTTGGGAGT

G

C

TC188

GGTCATTCTTCGAGACCTAC

CGATACTTTTTTGAGAGTAGG

ACTCAACATGTCTGT

G

A

TC189

AGACGTTATGAAGCACGACC

TTTGTTATCTTCCAAGGGC

GCACGACCCAATCCGTGTC

T

A

RPOL

CACGTTCATTCAAAGCGGAC

AATCCAAGATTTCAACCTC

GGTTGGTAAGTCGG

G

T