Table 3 Haplotypes of polymorphic sites on number-increase-type and wild-type alleles of swine VRTN gene
From: Identification of a second gene associated with variation in vertebral number in domestic pigs
STS for SNP/indel a | Q (number-increase type) | q (wild type, major) | q' (wild type, minor; found in Landrace) |
|---|---|---|---|
NV004 | T | C | T |
NV007 | C | G | C |
NV083 | A | G | G |
NV015(2) | A, G | C, A | A, G |
NV149 | T | A | A |
NV090 | T | C | C |
NV024 | A | T | T |
NV025 | G | A | G |
NV027(2) | C, C | A, T | A, C |
NV028 | A | G | A |
NV123 | ins (PRE1 291 bp) | del (PRE1 291 bp) | del (PRE1 291 bp) |
NV104 | G | A | G |
NV030(4) | A, T, C, T | G, G, T, C | A, T, C, T |
NV035 | C | G | C |
NV040(7) | del, A, A, G, G, C, T | A, G, T, A, A, T, C | del, A, A, G, G, C, T |
NV048 | A | G | A |
NV049(2) | T, C | C, T | T, C |
NV107 | AAA | AAAAA | AAAAA |
NV055(2) | T, GA | C, del | T, TGA |
NV058(4) | T, T, G, G | C, C, A, C | T, T, G, G |
NV062(2) | C, G | T, A | C, G |
NV064 | G | A | G |
NV065 | C | T | C |
NV067 | del | C | C |
NV071 | C | A | A |