Genome-wide association of milk fatty acids in Dutch dairy cattle

BMC Genomic Data

Table 2 SNP information per Bos Taurus chromosome

BTA	SNP	Length (Mbp)	SNP interval (bp)	Monomorph	Genorate < 80%	Freq < 0.006
0¹	776	-	-	1	6	84
1	3,011	160.91	53,371	4	25	355
2	2,451	140.64	57,333	20	19	269
3	2,342	127.13	54,212	12	11	260
4	2,300	124.09	53,930	11	20	239
5	2,215	125.78	56,788	5	18	214
6	2,844	122.39	43,050	12	25	334
7	2,017	111.67	55,392	8	14	209
8	2,131	116.93	54,818	15	15	243
9	1,860	108.05	58,090	14	20	206
10	1,911	106.10	55,406	14	11	202
11	2,193	110.01	50,187	18	12	239
12	1,512	85.22	56,324	6	14	147
13	1,689	84.00	49,732	11	12	155
14	2,122	81.29	38,272	9	17	222
15	1,446	84.23	58,130	5	7	169
16	1,455	77.83	53,454	8	12	183
17	1,561	76.40	48,942	5	14	159
18	1,282	66.04	51,429	3	8	131
19	1,452	65.13	44,826	5	7	147
20	1,479	75.41	50,985	3	9	156
21	1,246	69.08	55,440	5	15	130
22	1,256	61.75	49,161	4	10	139
23	1,169	53.27	45,570	7	10	107
24	1,296	64.93	50,141	10	13	159
25	1,256	43.44	34,617	6	9	109
26	1,131	51.00	45,097	7	6	152
27	933	48.73	52,280	3	13	117
28	899	46.01	51,184	6	5	94
29	1,029	51.78	50,371	6	4	109
X	591	88.46	149,940	2	2	55
Total	50,855	2,628		245	383	5,494

¹ unmapped SNPs
Total number of SNPs, map length, average SNP interval, number of monomorphic SNPs, number of SNPs with a genotyping rate (genorate) < 80% and number of SNPs with a genotype frequency (freq) < 0.006 for all Bos Taurus (BTA) chromosomes.

ISSN: 2730-6844