Skip to main content

Table 1 Genetic characterization of the 102 genomic SSRs in common beans

From: The characterization of a new set of EST-derived simple sequence repeat (SSR) markers as a resource for the genetic analysis of Phaseolus vulgaris

Locus p (1) N a Ho PIC Transf. species(2)
AG1 0.563 5 0.563 0.551 2,3,4,5,6, 7
AJ416389 0.714 3 0.000 0.406 -
AJ416391 0.667 2 0.000 0.346 -
AJ416395 - - - - -
BM003 - - - - 2, 4
BM006 - - - - 3, 4
BM016 - - - - 1,2,3, 4
BM020 - - - - -
BM068 0.500 3 0.000 0.456 2, 4
BM098 0.688 2 0.000 0.337 1,2,3,4,5,6,7,8,9, 10
BM114 0.538 4 0.000 0.576 -
BM137 0.200 9 0.000 0.857 3
BM138 0.571 2 0.000 0.370 -
BM140 0.875 3 0.000 0.215 1,2, 4
BM142 - - - - 2,3,4, 7
BM143 0.200 10 0.000 0.868 2, 4
BM146 - - - - 2,3,4,5, 7
BM148 - - - - 2,3,4, 7
BM149 0.813 2 0.000 0.258 2,4,5, 6
BM151 0.600 3 0.000 0.499 2,3, 4
BM153 - - - - -
BM154 0.250 9 0.000 0.835 2, 4
BM155 0.667 3 0.000 0.438 4
BM157 0.733 2 0.000 0.315 1,2,3,7, 8
BM158 0.417 6 0.000 0.719 3
BM159 0.625 3 0.000 0.468 4
BM160 0.625 6 0.000 0.553 2, 4
BM161 - - - - 2,3,5,6, 7
BM164 0.688 3 0.000 0.427 2,3,4,7, 10
BM165 0.667 2 0.000 0.346 -
BM166 - - - - 2,4, 5
BM167 0.500 3 0.000 0.511 3,4, 7
BM175 0.667 4 0.000 0.462 4, 5
BM181 0.500 2 0.000 0.375 2, 4
BM183 0.438 5 0.000 0.657 2,3,4
BM184 0.571 3 0.000 0.501 -
BM185 0.313 4 0.000 0.675 1,2,3,4,5,7, 8
BM187 0.125 11 0.000 0.889 1,2,3, 4
BM189 0.500 4 0.000 0.570 2, 4
BM197 0.625 3 0.000 0.468 2,3,4,5,6,7, 8
BM200 0.286 7 0.000 0.768 2, 4
BM201 0.375 4 0.000 0.658 2, 4
BM202 0.714 2 0.000 0.325 2, 3, 4
BM205 0.375 5 0.000 0.711 -
BM210 0.385 4 0.000 0.613 2, 4
BM211 0.286 7 0.000 0.792 2, 4
BM212 0.444 4 0.000 0.607 -
GATs11B 0.625 2 0.000 0.359 4
GATs54 0.571 2 0.000 0.370 2
PV005 0.375 6 0.000 0.712 -
PV011 0.375 4 0.000 0.636 2, 4
PV012 0.688 2 0.000 0.337 2, 4
PV013 0.462 7 0.000 0.709 -
PV025 0.200 7 0.000 0.825 2, 4
PV035 0.600 5 0.000 0.562 2, 4
PV038 0.500 2 0.000 0.375 -
PV051 - - - - 2,3,4,5, 7
PV053 0.733 3 0.000 0.388 2,3, 4
PV055 0.367 5 0.467 0.699 2, 4
PV060 0.364 6 0.000 0.726 2,3, 4
PV067 0.400 4 0.000 0.624 -
PV077 0.800 3 0.000 0.309 2,3, 4
PV080 - - - - 1,2,3, 4
PV087 0.625 5 0.000 0.539 2, 4
PV096 - - - - 3
PV097 0.333 5 0.000 0.738 2,3,5,6, 7
PV101 - - - - 8
PV102 0.462 3 0.000 0.566 -
PV105 - - - - -
PV112 0.625 3 0.000 0.428 2,3, 4
PV113 0.533 3 0.000 0.456 2, 4
PV118 0.688 2 0.000 0.337 2, 4
PV131 - - - - 4
PV140 - - - - 2,3,4,5,7,8, 10
PV148 - - - - 3
PV162 - - - - 2
PV163 0.333 7 0.000 0.775 2 e 4
PV168 0.667 2 0.000 0.346 2, 4
PV169 0.455 4 0.000 0.623 -
PV174 - - - - 2 e 4
PV180 - - - - 2, 4
PV193 0.500 3 0.000 0.544  
PV194 - - - - 1,2, 3
PV198 0.583 2 0.000 0.368 1,2, 3
PV200 - - - - -
PV202 - - - - 2,3,4, 8
PV204 - - - - 3
PV207 - - - - 3
PV215 - - - - -
PV221 - - - - -
PV231 - - - - 2, 4
PV237 0.844 2 0.313 0.229 3
PV243 - - - - 2,3,4,5, 7
PV251 - - - - 1,2,3,4, 7
PV254 - - - - -
PV258 0.813 2 0.375 0.258 4
PV259 0.500 2 0.000 0.375 -
PV265 0.813 2 0.000 0.258 -
PV268 - - - - -
PV270 0.636 2 0.000 0.356 2, 4
PV272 0.250 8 0.000 0.825 3
PV243 0.250 7 0.000 0.812 -
  1. Detailed information of the allele frequency (p) average over locus, the number of alleles per locus (N a), the observed heterozygosity (Ho), the polymorphism information content (PIC) and the species for which the SSRs were transferable.
  2. (1)Average allele frequency
  3. (2) Transferable species: 1- Medicago sativa; 2- Phaseolus lunatus; 3- P. coccineus; 4- P. acutifolius; 5- Vigna mungo; 6- V. angularis; 7-V. unguiculata; 8- Glicine max; 9- Arachis hypogaea; 10- Dipteryx alata.