From: MCP1 haplotypes associated with protection from pulmonary tuberculosis
MCP1 | variant | rs # | Primer oligonucleotides | Sensor/Anchor oligonucleotides |
---|---|---|---|---|
-97569 | C/G | rs9891330 | F-TCTGATGCAGACAGCGAG | S-GCCTCCCCCACCCCCA |
 |  |  | R-CACCTGGAGTCCCAGTT | A-ATAGCTGTCGGGAGAGTCTGTATTTGAAAGAGAA |
-38600 | C/T | rs8075337 | F-CTTCTGTGAGCATTGGGT | S-ACTTCTTTTGCTGTGTTTTATTTTATTTTC |
 |  |  | R-AGAAACAAAAATTAGGGCATCTAC | A-CCAACATCTGGATTTCTTCAGGGACAGTTTACATT |
-1727 | A/T | rs3917886 | F-TGGGATTCTCCAGGAAACC | S-GAAGAAGAGATACTGGAATGGAAACATCC |
 |  |  | R-ACCCAGCTTTCGTTAGG | A-GGGTGGGAGTCTCAGCACATCTACTATTCTGTC |
Int1:96 | C/G | rs41507946 | F-TAAGGCCCCCTCTTCTTC | S-CCCACAGTCTTGCTTTAACGCTAC |
 |  |  | R-CTGTGTGGTTGGGCTCA | A-TTTCCAAGATAAGGTGACTCAGAAAAGGACAAGGG |
Int1:554-567 | W/D | rs3917887 | F-TCCCCAGCTGATCTTCC | S-TTTAACCGCTCCTCCTTC |
 |  |  | R-TGACTCAGTTTCCTATGCTGTA | A-GTCCGTCTTAATGACACTTGTAGGCATTATCTAG |
+1542 | C/T | rs13900 | F-GACCACCTGGACAAGCA | S-TAGCTTTCCCCAGACACCCTGTTTTA |
 |  |  | R-ATTACTTAAGGCATAATGTTTCACATC | A-CACAACCCAAGAATCTGCAGCTAACTTATTTTCCC |
+2413 | G/T | rs3917890 | F-ATGAGACCTGAACTTATTATTTA | S-GATCATTAAGAAAGGAGAAGGAAGAGTGG |
 |  |  | R-TTCACCCTAACATTCAAATC | A-AGCAAATACCTGGAGGTAGAAATGGTGATGATGTGTAC |
+2580 | A/T | rs41343046 | F-GCCCACACCAATGTCAA | S-AAGGGATTTGAATGTTAGGGTGAAAAGATA |
 |  |  | R-CTGAATCTCTAAACATGGCAC | A-ACTCAACTCTGTAGGTTAAAAGGAAACGTTGAGAA |