From: Comparative analysis of copy number variation detection methods and database construction
Programs | Segmental repeats | ALL* | Only SINE | Only LINE | Only LTR | Segmental repeat +interspersed repeats (ALL*) |
---|---|---|---|---|---|---|
Random* ± 500bp | 2.8 | 17.3* | 0.0 | 7.8 | 1.6 | 19.6 |
Random ± 1kbp | 2.9 | 21.7 | 0.4 | 10.6 | 1.9 | 24.1 |
CNVCommon1 ± 500bp | 34.0 | 24.8 | 0.0 | 12.4 | 2.3 | 53.9 |
CNVCommon1 ± 1kbp | 34.6 | 39.5 | 1.3 | 21.9 | 5.6 | 62.7 |
CNVCommon2 ± 500bp | 32.2 | 29.1 | 0.0 | 11.6 | 2.5 | 53.7 |
CNVCommon2 ± 1kbp | 33.1 | 43.8 | 0.0 | 25.8 | 5.0 | 65.3 |