Skip to main content

Table 1 Summary counts of Pinus taeda marker evaluation and mapping results

From: An annotated genetic map of loblolly pine based on microsatellite and cDNA markers

Marker type SSR eval 1 baseseg2 qtlseg2 Totalseg2 basemap3 qtlmap3 Both map4 Rnd 3 integ map5 Rnd 2 integ map6
genomic SSR 804 138 134 168 121 113 86 149 133
EST SSR 873 72 70 97 61 60 37 84 78
ESTP n/a 69 104 159 49 65 10 104 98
RFLP n/a 56 139 166 44 100 21 123 120
total 1677 335 447 590 275 338 154 460 429
  1. n/a - not applicable.
  2. 1 SSR primer pairs that were evaluated.
  3. 2 Markers that segregated in the base pedigree, qtl pedigree, and either (Total seg).
  4. 3 Markers in the respective pedigree maps used for map integration.
  5. 4 Markers common to both base and qtl pedigrees and used for map integration.
  6. 5 Non-redundant marker loci in the round-3 integrated map, which included ancillary markers, as listed in Additional File 2.
  7. 6 Non-redundant marker loci in the round-2 integrated map, which excluded ancillary markers, as shown in Figure 1 and listed in Additional file 5.