Marker type | SSR eval 1 | baseseg2 | qtlseg2 | Totalseg2 | basemap3 | qtlmap3 | Both map4 | Rnd 3 integ map5 | Rnd 2 integ map6 |
---|
genomic SSR | 804 | 138 | 134 | 168 | 121 | 113 | 86 | 149 | 133 |
EST SSR | 873 | 72 | 70 | 97 | 61 | 60 | 37 | 84 | 78 |
ESTP | n/a | 69 | 104 | 159 | 49 | 65 | 10 | 104 | 98 |
RFLP | n/a | 56 | 139 | 166 | 44 | 100 | 21 | 123 | 120 |
total | 1677 | 335 | 447 | 590 | 275 | 338 | 154 | 460 | 429 |
- n/a - not applicable.
- 1 SSR primer pairs that were evaluated.
- 2 Markers that segregated in the base pedigree, qtl pedigree, and either (Total seg).
- 3 Markers in the respective pedigree maps used for map integration.
- 4 Markers common to both base and qtl pedigrees and used for map integration.
- 5 Non-redundant marker loci in the round-3 integrated map, which included ancillary markers, as listed in Additional File 2.
- 6 Non-redundant marker loci in the round-2 integrated map, which excluded ancillary markers, as shown in Figure 1 and listed in Additional file 5.