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Table 5 SNP marker associations and estimated effects for ADG in the validation population of crossbred steers (n = 406).

From: Association, effects and validation of polymorphisms within the NCAPG - LCORL locus located on BTA6 with feed intake, gain, meat and carcass traits in beef cattle

       Average Daily Gain (ADG)
Marker1 Illumina BeadChip2 Rs# Position3 IUB MAF Effect5 SE P -value
79154_347    37979262 S C = 0.34 -0.016 0.0183 0.4
79158_103    37984197 S G = 0.35 0.019 0.0183 0.3
ARS-BGFL-NGS-45457 rs109447543 38102327 W A = 0.42 0.029 0.0178 0.1
83704_234    38157198 R A = 0.49 0.018 0.0166 0.3
83708_361    38158932 Y C = 0.49 -0.0015 0.0194 0.9
83712_168    38163729 R A = 0.47 -0.0029 0.0186 0.9
83714_224    38164403 K G = 0.42 0.031 0.0179 0.09
83724_658    38180790 Y T = 0.49 -0.023 0.0171 0.2
83732_316    38195743 R G = 0.49 0.0042 0.0205 0.8
Hapmap24122-BTC-041153    38217816 K G = 0.43 0.021 0.0175 0.2
Hapmap24041-BTC-041151    38220879 K T = 0.44 0.022 0.0175 0.2
Hapmap31609-BTC-041148    38223329 R A = 0.49 0.015 0.0170 0.4
HapMap23507-BTC-041133 rs110961068 38233088 M C = 0.45 0.00019 0.0192 1
Hapmap27082-BTC-041131    38233962 R A = 0.44 -0.027 0.0178 0.1
Hapmap26855-BTC-041123    38239191 R G = 0.42 0.025 0.0185 0.2
Hapmap23341-BTC-041113    38250098 K T = 0.44 0.013 0.0181 0.5
81441_243    38255270 S G = 0.46 0.017 0.0186 0.4
HapMap31285- BTC-041097 rs109294917 38256889 Y C = 0.44 0.021 0.0175 0.2
81435_188    38284737 Y T = 0.42 -0.030 0.0189 0.1
Hapmap28589-BTC-041045 6    38300298 S G = 0.45 0.038 0.0185 0.04
Hapmap33629-BTC-041038    38313142 Y T = 0.44 0.026 0.0191 0.2
Hapmap33694-BTC-041005    38342183 R G = 0.08 0.021 0.0276 0.4
81405_282 6    38376731 M A = 0.46 0.039 0.0180 0.03
HapMap27529-BTC-050639 rs110335851 38420476 R G = 0.29 -0.013 0.0187 0.5
HapMap28546- BTC-072715 rs43027303 38558526 S G = 0.21 -0.034 0.0204 0.1
HapMap27537- BTC-060891 rs110240246 38638962 R A = 0.40 -0.0064 0.0218 0.8
  1. 1 Name of publicly available markers from the following references: Van Tassell CP et al. [26], Bovine HapMap Consortium et al. [27], and Bovine Genome Sequencing and Analysis Consortium et al. [28].
  2. 2 Markers with check marks are from the BovineSNP50 Illumina BeadChip. These markers were significantly associated with ADFI and/or ADG in the discovery population of crossbred steers [9].
  3. 3 Position based on the Btau 4.0 Bovine Genome Assembly.
  4. 4NP corresponding to the effects presented.
  5. 5 ADFI and ADG effects are displayed as kg/d. Effects are shown that correspond to the minor allele.
  6. 6 Markers in bold font, Hapmap28589-BTC-041045 and 81405_282, were significantly associated with ADG in the validation population of animals (P = 0.04 and 0.03, respectively).
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