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Table 3 β-actin, rpl8 and gapdh P and A allele-specific transcripts detected in liver and kidney cells of individuals from Almargem, Guadiana and Tejo populations of the S. alburnoides complex

From: Ploidy mosaicism and allele-specific gene expression differences in the allopolyploid Squalius alburnoides

Code

River Basin

River site

Ploidy

Genotype1

Liver expression

Kidney expression

     

β -actin

rpl8

gapdh

β -actin

rpl8

gapdh

Sq22

Guadiana

Murtega

2n

AA

A

A

A

A

A

A

Sq23

Guadiana

Murtega

2n

AA

A

A

A

A

A

A

Sq1

Almargem

Almargem

2n

AA

A

A

A

A

A

A

Sq3

Almargem

Almargem

2n

PP

P

P

P

P

P

P

Sq4

Almargem

Almargem

2n

PP

P

P

P

P

P

P

Sq5

Almargem

Almargem

2n

PP

P

P

P

P

P

P

Sq27

Guadiana

Murtega

2n

PA

PA

PA

PA

PA

PA

PA

Sq8

Almargem

Almargem

2n

PA

PA

PA

PA

PA

PA

PA

Sq29

Guadiana

Foupana

3n/3n

PAA

PA/PA

PA/PA

PA/PA

PA/PA

PA/PA

PA/PA

Sq31

Guadiana

Caia

3n/3n

PAA

PA/PA

PA/PA

PA/PA

PA/PA

PA/PA

PA/PA

Sq9

Almargem

Almargem

3n

PAA

PA

PA

A

PA

PA

A

Sq13

Almargem

Almargem

3n

PAA

PA

PA

PA

PA

PA

PA

Sq14

Almargem

Almargem

3n

PAA

A

PA

PA

PA

PA

PA

Sq18

Almargem

Almargem

3n/3n

PAA

PA/PA

PA/PA

PA/PA

PA/PA

PA/PA

PA/PA

Sq16

Almargem

Almargem

3n/2n

PAA/AA

PA/A

PA/A

PA/A

PA/A

PA/A

PA/A

Sq38

Tejo

Sorraia

3n

PPA

PA

PA

PA

PA

PA

PA

Sq40

Tejo

Sorraia

3n

PAA

PA

PA

PA

PA

PA

A

Sq36

Tejo

Ocreza

3n

PPA

PA

PA

PA

PA

PA

PA

Sq37

Tejo

Ocreza

3n

PPA

PA

PA

PA

PA

PA

PA

Sq33

Tejo

Ocreza

3n

PAA

PA

PA

PA

PA

PA

A

  1. 1DNA extracted from liver cells