Contrasting population genetic patterns within the white-throated sparrow genome (Zonotrichia albicollis)

BMC Genomic Data

Table 1 Sampling information and diversity values for autosomal and sex-linked loci compared to previously reported values for ZAL2 and ZAL2^m alternative chromosome arrangements.

Chromosome Class	Orthologous chromosome in chicken	Number of loci sampled	Number of chromosomes sampled	Total length sampled (bp)	S	Silent π ^a	± SD
Sex chromosomes	Z	9	18-22	3832 (3603)^b	12	0.00050	± 0.00009
	W	3	46-48	1729	1	0.00005	± 0.00005
ZAL2^c	3	58	16	34827 (13804)^b	61	0.00072	± 0.00007
ZAL2^{m, c}	3	58	8	34827 (13804)^b	32	0.00039	± 0.00006
Chr2 outside of inversions^c	3	4	24	1654 (777)^b	17	0.00296	± 0.00041
Macrochromosomes	1, 2, 4	12	16-22	4773	44	0.00198	± 0.00033
Intermediate chromosomes	6, 7, 8, 9, 10	8	18-24	3101	87	0.00485	± 0.00054
Microchromosomes	17, 24, 27, 28	7	16-22	2083 (1980)^b	136	0.01591	± 0.00115

S refers to the number of observed segregating sites.
^aAverage diversity is calculated from concatenated haplotypes from all loci in each category.
^bNumbers in parentheses indicates the number of synonymous and noncoding positions.
^cData previously reported in a survey of standard ZAL2, inverted ZAL2^m and a region outside of the inversion polymorphism.

ISSN: 2730-6844