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Table 7 Summary of QC statistics for most significant windows

From: Comparison of multimarker logistic regression models, with application to a genomewide scan of schizophrenia

Chromosome

SNP

Min differential

missingness

p-value

Haplotype HWE

p-value

Min SNP HWE

p-value

2

rs6759206

8.20E-02

4.20E-01

2.29E-01

2

rs2317011

9.86E-02

3.90E-01

2.29E-01

2

rs1962550

9.86E-02

3.90E-01

2.29E-01

5

rs2964798

4.99E-02

4.90E-01

1.57E-02

5

rs13155209

4.99E-02

7.60E-01

1.57E-02

5

rs10043680

4.86E-02

8.20E-01

2.47E-01

5

rs17771257

4.86E-02

5.80E-01

3.75E-01

5

rs17176973

4.86E-02

8.80E-01

7.01E-02

5

rs17075700

7.73E-02

3.90E-01

4.29E-02

7

rs10227362

1.16E-01

6.70E-01

3.85E-01

7

rs12534223

1.16E-01

9.30E-01

1.33E-01

9

rs10967991

1.82E-01

< 0.001

1.07E-01

9

rs1982915

1.82E-01

< 0.001

1.07E-01

9

rs2783010

1.82E-01

1.10E-02

1.07E-01

9

rs10967992

7.94E-02

1.60E-02

1.07E-01

9

rs10967993

7.94E-02

1.60E-01

1.07E-01

9

rs872251

6.24E-03

3.20E-01

7.78E-03

9

rs7850685

6.24E-03

5.00E-02

7.78E-03

9

rs13049

6.24E-03

5.70E-01

1.03E-01

10

rs682664

5.85E-02

4.70E-01

3.94E-02

12

rs10774841

3.08E-01

3.10E-01

2.40E-02

15

rs3784405

1.99E-01

6.30E-01

3.83E-01

17

rs9904870

1.88E-01

4.80E-01

2.50E-01

18

rs4542737

4.05E-02

7.60E-01

6.47E-04

20

rs967417

2.42E-01

4.30E-01

1.23E-01

  1. QC statistics for 25 most significant main-effects windows.