|
Density
|
Number of marker SNP sets with adjacent interactions included
|
Number (proportion) with significant improvement in log-likelihood
|
Number (proportion) with improvement in AIC
|
|---|
|
5
|
727
|
662 (91.1%)
|
674 (92.7%)
|
|
20
|
983
|
955 (98.3%)
|
961 (97.8%)
|
- Results of whether including adjacent interaction improves modelling of marker haplotype frequencies. Columns refer to 1) the density of marker SNPs (in terms of 1 marker SNP per x SNPs in dataset generated by COSI); 2) the number of sets (out of 1000) where adjacent interactions were not fully predictable from main-effects; 3) the number of sets with adjacent interactions included where they resulted in a significant improvement in model fit (at 5% significance level); 4) the number of sets where including adjacent interactions reduced the AIC.
