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Table 2 Armitage trend test on nine PTPN2 2 SNPs and RA susceptibility

From: PCA-based bootstrap confidence interval tests for gene-disease association involving multiple SNPs

SNP

Genotype

Female

Male

  

Case

Control

P -value

Case

control

P -value

rs971173

CC

334

381

0.025

116

169

0.779

 

AC

236

363

 

85

134

 
 

AA

71

106

 

26

39

 

rs1217390

AA

268

319

0.333

99

112

0.108

 

AG

272

392

 

89

175

 
 

GG

98

138

 

38

55

 

rs878129

GG

338

507

0.009

131

187

0.384

 

AG

251

291

 

83

130

 
 

AA

52

54

 

13

25

 

rs11811771

AA

224

272

0.090

78

111

0.717

 

AG

303

411

 

104

168

 
 

GG

112

169

 

45

62

 

rs11102703

CC

312

469

0.024

121

174

0.418

 

AC

269

314

 

90

137

 
 

AA

60

69

 

16

31

 

rs7545038

GG

321

428

0.696

109

186

0.417

 

AG

265

342

 

98

114

 
 

AA

52

80

 

20

40

 

rs1503832

AA

324

487

0.013

129

185

0.249

 

AG

262

306

 

86

127

 
 

GG

55

59

 

12

30

 

rs12127377

AA

349

521

0.017

139

197

0.230

 

AG

243

282

 

78

121

 
 

GG

49

48

 

10

24

 

rs11485101

AA

564

738

0.656

206

305

0.430

 

AG

72

112

 

21

35

 
 

GG

5

2

 

0

2

 
  1. None of the P-values is significant after Bonferroni Correction.