Table 1 HMM with genotype/haplotype emissions.
From: Improved IBD detection using incomplete haplotype information
A | NO IBD | IBD | lev G |
|---|---|---|---|
{AA, AA} | p 4 | p 3 | log2(p) |
{AA, AB} | 4p3q | 2p2q | 1 + log2(p) |
{AA, BB} | 2p2q2 | 0 | γ |
{AB, AB} | 4p2q2 | pq | 2 + log2(pq) |
{AB, BB} | 4pq3 | 2pq2 | 1 + log2(q) |
{BB, BB} | q 4 | q 3 | log2(q) |
B | NO IBD | IBD | lev H |
{A, A} | p 2 | p | log2(p) |
{A, B} | 2pq | 0 | γ |
{B, B} | q 2 | q | log2(q) |