Haplotypes that include the integrin alpha 11 gene are associated with tick burden in cattle

BMC Genomic Data

Table 2 Significant SNP markers at the ITGA11 gene region associated with tick burden

Locus	Sample¹	N²	p₀³	R^{2 4}	α⁵	SE⁶	p-value
rs29025985	DTE	812	0.68	0.0075	-0.131	0.053	0.0135
rs29025981	DTE	859	0.32	0.0091	0.147	0.053	0.0052
ss161109814	DTE	1037	0.40	0.0053	0.109	0.046	0.0188
	BRM	526	0.06	0.0115	-0.309	0.125	0.0140
ss161109797	BRM	526	0.05	0.0105	-0.332	0.141	0.0188
rs29023635	DTE	914	0.69	0.0069	-0.127	0.05	0.0119
rs29023639	COM	181	0.01	0.0244	-1.476	0.698	0.0359
rs29014770	BRM	544	0.99	0.0085	0.601	0.279	0.0317

¹ DTE - dairy tick experiment, BRM - Brahman, COM - Tropical Composite.
² Number of individuals tested.
³ Frequency of the allele closer to A in the alphabet.
⁴ Proportion of residual variance explained.
⁵ Allele substitution effect in phenotypic standard deviations (tick count for the DTE and tick score for BRM and COM).
⁶ Standard error of α.

ISSN: 2730-6844