Haplotypes that include the integrin alpha 11 gene are associated with tick burden in cattle

BMC Genomic Data

Table 1 Description of markers tested in dairy and beef cattle samples

Locus	Position Btau4.0	Ref¹	Sample²	N³	p₀⁴	HWE⁵ p-value
rs29027392	9844454	BTA	DTE	820	0.03	0.0080 (1 breed)
rs41613225	9874407	BTA	DTE	820	0.34	0.0103 (1 breed)
rs41664397	11938389	BTA	DTE	820	0.15	0.0053 (1 breed)
Ars-BFGL-NGS-70946	14471603	Illumina	DTE	819	0.38	0.0173 (1 breed)
rs29025980	14925193	BTA	DTE	875	0.23	< 0.05 (3 breeds)
			BRM	525	0.05	1.34e-38
			COM	196	0.27	2.36e-24
rs43616884	14937129	BTB	DTE	915	0.28	ns
			BRM	546	0.05	0.0277
			COM	207	0.20	ns
rs29025985	14943961	BTA (GWAS)	DTE	812	0.68	ns
			BRM	464	0.09	ns
			COM	186	0.37	ns
rs29025981	14944238	BTA (GWAS)	DTE	859	0.32	ns
			BRM	517	0.91	ns
			COM	201	0.63	ns
rs41594962	14979585	BTA	DTE	1042	0.29	0.0256 (1 breed)
			BRM	545	0.01	ns
			COM	207	0.20	ns
ss161109814	14996440	This paper	DTE	1037	0.40	ns
			BRM	526	0.06	ns
			COM	205	0.24	ns
ss161109807	15002496	This paper	DTE	1027	0.28	ns
			BRM	525	0.62	ns
			COM	210	0.49	ns
ss161109797	15003391	This paper	DTE	1032	0.04	0.0337 (1 breed)
			BRM	526	0.05	ns
			COM	212	0.03	ns
rs29023635	15034937	BTA	DTE	914	0.69	ns
			BRM	549	0.06	ns
			COM	213	0.41	ns
rs29023639	15035100	BTA	DTE	296	< 0.01	ns
			BRM	548	< 0.01	ns
			COM	181	0.01	ns
rs29014770	15102776	BTA	DTE	901	0.68	ns
			BRM	544	0.99	ns
			COM	202	0.72	ns
rs41657550	17147707	BTA	DTE	820	0.68	ns
Ars-BFGL-NGS-25507	18216232	Illumina	DTE	819	0.75	< 0.05 (2 breeds)

¹ Database in which the markers were described, BTA - BCM Interbreed SNP, BTB - BCM Genome Assembly SNP, Illumina - BovineSNP50^®, GWAS - significant markers at the genome wide association study.
² DTE - dairy tick experiment, BRM - Brahman, COM - Tropical Composite.
³ Number of individuals tested.
⁴ Frequency of the allele closer to a in the alphabet.
⁵ Hardy-Weinberg equilibrium test p-value, ns - not significant.

ISSN: 2730-6844