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Table 2 List of breeds, diversity measures and geographical distribution of haplogroups: the number of samples N i, the haplotype diversity h, the nucleotide diversity π.

From: Vietnamese chickens: a gate towards Asian genetic diversity

Breed names Code Province Country Ni Number of haplotypes h π Haplogroups (%) Nb of haplogroups
         A B C D E F G  
Beijing Youkei BY Beijing China 4 3 0.83 0.006 75 25 0 0 0 0 0 2
Huxu HX Guangdong China 5 1 0.00 0.000 0 0 100 0 0 0 0 1
Qinyuan blotted QY Guangdong China 10 3 0.60 0.011 0 33 67 0 0 0 0 2
Luke LK Guanxi China 9 4 0.81 0.013 44 22 33 0 0 0 0 3
Wanfeng Wugu Wangf Guanxi China 9 5 0.81 0.016 44 11 11 0 0 11 22 5
Dwarf Wugu Dwarf Guizhou China 10 5 0.86 0.012 27 27 0 0 45 0 0 3
Guizhou Moutain Wugu Wguiz Guizhou China 10 5 0.76 0.012 64 0 18 0 27 0 0 3
Heikang Layer HK Guizhou China 5 2 0.60 0.013 60 0 40 0 0 0 0 2
Wumeng Wugu WM Guizhou China 4 2 0.67 0.003 0 100 0 0 0 0 0 1
Gushi Wugu Wgus Henan China 11 6 0.89 0.012 42 8 0 0 42 0 8 4
Henan Cockfight DJ Henan China 4 1 0.00 0.000 25 58 0 0 17 0 0 3
Taihe Silky SY Henan China 14 3 0.65 0.010 36 50 14 0 0 0 0 3
Black Silky hubei HBHF Hubei China 10 3 0.60 0.005 40 60 0 0 0 0 0 2
Silky hybrid KD Hubei China 3 2 0.67 0.009 33 67 0 0 0 0 0 2
Silky hubei HBBF Hubei China 11 3 0.69 0.011 36 45 18 0 0 0 0 3
Yunxian Wugu Y Hubei China 10 5 0.87 0.014 20 30 50 0 0 0 0 3
Xuefeng XF Hunan China 8 4 0.64 0.008 0 75 13 0 13 0 0 3
Langshan RS Jiangsu China 4 1 0.00 0.000 0 100 0 0 0 0 0 1
Silky Jiangsu JSW Jiangsu China 13 6 0.85 0.013 38 23 31 0 0 8 0 4
Yugan wugu YG Jiangxi China 4 4 1.00 0.015 25 25 0 0 50 0 0 3
Bigbone DG Liaoning China 4 2 0.50 0.005 25 75 0 0 0 0 0 2
Souguang SG Shangdong China 4 3 0.83 0.007 25 75 0 0 0 0 0 2
Caoke Caoke Sichuan China 16 6 0.62 0.004 94 0 0 0 6 0 0 2
Chengdu Black Silky ChenBlaSil Sichuan China 9 5 0.81 0.010 44 44 0 0 0 0 11 3
Chengdu Silky ChenSil Sichuan China 6 4 0.71 0.004 100 0 0 0 0 0 0 1
SichuanMountain Wugu sdw Sichuan China 11 6 0.87 0.012 25 8 25 0 42 0 0 4
Ya'an Non Wugu YH Sichuan China 7 3 0.67 0.002 100 0 0 0 0 0 0 1
Ya'an Wugu YW Sichuan China 10 8 0.87 0.010 44 22 11 0 22 0 0 4
Tibetan ZJ Tibetan China 4 1 0.00 0.000 100 0 0 0 0 0 0 1
Chahua Chahua Yunnan China 16 8 0.87 0.008 42 56 0 0 2 0 0 3
Chigulu Chig Yunnan China 19 7 0.78 0.015 27 33 0 9 0 9 21 5
Douji Douji Yunnan China 9 5 0.72 0.010 11 72 0 0 6 6 6 5
Jiangbian Jiang Yunnan China 28 11 0.85 0.013 14 0 0 0 4 43 39 4
Lv'erwu Lerv Yunnan China 29 13 0.92 0.017 24 14 3 0 10 17 31 6
Nixi NX Yunnan China 9 8 0.97 0.015 9 7 0 0 2 32 50 5
Shenggou Sheng Yunnan China 3 2 0.67 0.019 50 0 0 0 0 50 0 2
Tenchongxue Teng Yunnan China 45 15 0.88 0.016 32 7 0 0 5 50 7 5
Whenshanshandi When Yunnan China 35 12 0.89 0.015 31 28 3 0 0 14 25 5
Wuding WD Yunnan China 7 4 0.81 0.010 29 57 0 0 0 0 14 3
Yanjing Wugu YJ Yunnan China 8 7 0.96 0.015 13 13 13 0 0 0 63 4
HG population HG Ha Giang Vietnam 106 25 0.86 0.013 21 53 5 2 0 13 6 6
G. g. jabouillei     3 3    33 0 0 33 0 33 0 3
G. g. spadiceus (Genbank + Gg1) 47 13    15 38 0 23 0 11 0 5*
G. g. gallus (Genbank + Gg2 + Gg3) 46 19    4 26 0 22 2 11 15 8*
  1. * G. g. gallus also had haplotypes from cluster I and H that are not represented in this table