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Table 4 The associations between SNPs and levels of androstenone in Duroc and Landrace boarsa

From: Transcript profiling of candidate genes in testis of pigs exhibiting large differences in androstenone levels

B

Gene

Genotype 1

Genotype 1/2

Genotype 2

P value

D

CYB5A_-8(5'UTR)

G(n = 902):3.45 (± 0.12)

G/T(n = 51): 2.56(± 0.38)

-

0.01

D

HSD3B_-15(5'UTR)

C (n = 67): 2.38 (± 0.45)

C/T(n = 293):2.70(± 0.20)

T (n = 409):3.25(± 0.12)

0.11

D

HSD3B_271-exon2

-

A/G(n = 74): 2.82(± 0.11)

G (n = 641):3.03(± 0.28)

0.68

D

NCOA4_3'UTR

A(n = 326):3.48 (± 0.23)

AG(n = 413):3.49(± 0.21)

G(n = 180):3.67 (± 0.26)

0.22

L

CYB5A_-8(5'UTR)

G(n = 1278):1.18(± 0.04)

G/T(n = 25): 0.97 (± 0.15)

-

0.14

L

CYP11A1_150-exo1

A(n = 321):1.05 (± 0.13)

A/G(n = 352):1.23(± 0.11)

G(n = 153):0.96 (± 0.20)

0.39

L

HSD3B_-15(5'UTR)

C(n = 74): 1.00(± 0.19)

C/T(n = 267):1.31(± 0.13)

T(n = 430): 1.02(± 0.11)

0.16

L

HSD3B_271-exon2

A(n = 14): 1.00(± 0.21)

A/G(n = 94): 0.88(± 0.16)

G(n = 512): 1.11(± 0.29)

0.64

L

NCOA4_3'UTR

A(n = 204):1.24(± 0.09)

A/G(n = 530):1.18(± 0.05)

G(n = 425): 1.10(± 0.06)

0.36

  1. aThe number of boars is shown between parentheses after each genotype. The least square means are shown for all genotypes and estimated standard errors are shown between the parentheses. Dash is no genotype found. B = Breed, D = Duroc and L = Norwegian Landrace.