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Table 1 mtDNA-Dloop sequence variability and mismatch parameters under demographic (τ, θ0 and θ1) and spatial expansions (τ, θ and m).

From: Phylogeography and historical demography of the Pacific Sierra mackerel (Scomberomorus sierra) in the Eastern Pacific

  

Population

  

SIN

SIN-04

MICH

OAX

CH

PE

Genetic variability

n

43

26

31

50

47

49

 

nh

42

26

28

48

47

49

 

h

0.999

1.0

0.994

0.998

1.0

1.0

 

(SD)

(0.005)

(0.011)

(0.01)

(0.004)

(0.004)

(0.004)

 

π

0.0244

0.0076

0.00144

0.0183

0.0214

0.0217

 

(SD)

(0.0097)

(0.0036)

(0.0048)

(0.0072)

(0.0082)

(0.0089)

Demographic

τ

1.7

5.0

10.6

9.5

13.4

11.8

 

T (Ky)

250.8

108.3

228.3

204.9

287.2

252.8

 

(CI-95%)

161.4-550.8

75.1-135.9

138.5-292.4

143.5-327.1

212.4-387.0

168.7-289.8

 

θ0

5.1

0

0.01

3.0

1.7

0.0

 

N 0

55 000

0

128

32 418

18 432

0.0

 

θ1

5.1

99 999

51.5

255.3

105.9

156.2

 

N 1

55000

1.07 × 109

552 300

2.7 × 106

1.13 × 106

1.68 × 106

Spatial

τ

10.4

5.0

8.9

9.2

12-0

11.5

 

T (Ky)

223.5

108.3

191.8

198.2

258.5

246.5

 

(CI-95%)

154.9-391.6

60.4-135.8

119.8-274.7

142.5-280.7

201.5-335.8

189.0-337.0

 

θ

6.4

0.0007

1.5

3.3

3.0

3.1

 

N

69 400

7.5

16 500

35 900

33 100

33 800

 

M

530.3

99 999

94.2

1251.9

2006.6

99 999

 

m

0.004

6 600

0.003

0.02

0.03

1.5

  1. Sample size (N), number of haplotypes (nh), haplotype diversity (h), nucleotide diversity (π), standard deviation (SD), time since expansion (T) in thousand years (Ky). Ranges for T are given for 95% confidence intervals.