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Table 2 Variable sites of the aligned sequences of three chloroplast DNA fragments in 32 haplotypes of Scutellaria baicalensis and 2 haplotypes of Scutellaria rehderiana.

From: Impacts of recent cultivation on genetic diversity pattern of a medicinal plant, Scutellaria baicalensis (Lamiaceae)

Haplotype

Nucleotide position

 

atp B- rbc L

trn L- trn F

psb A- trn H

 

60

193

195

202

203

214

310

381

503

507

603

656

723

22

177

264

265

463

484

726

48

73

151

188

212

236

260

295

326

366

379

435

447

451

HapA

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

C

C

G

-

-

-

-

-

-

-

G

§

-

T

A

HapB

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapC

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

A

HapD

C

C

T

T

-

-

C

G

A

C

T

G

G

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapE

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

-

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

A

HapF

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

¶

¶

-

-

-

A

G

§

-

T

T

HapG

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapH

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

¶

¶

¶

¶

-

A

G

§

-

T

T

HapI

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

A

§

-

T

T

hapJ

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

¶

-

-

-

-

A

G

§

-

T

T

HapK

C

C

T

T

-

-

C

G

C

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

A

HapL

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

A

§

-

T

T

HapM

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

-

-

-

A

A

C

G

-

-

-

-

-

-

A

G

§

-

G

T

HapN

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

A

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapO

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapP

C

C

T

T

-

-

C

G

A

C

T

G

T

-

T

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapQ

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

G

T

HapR

C

C

T

T

-

T

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

A

HapS

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

A

HapT

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

-

-

-

A

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapU

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

#

-

-

-

-

-

A

G

§

-

T

T

HapV

C

C

T

-

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapW

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

-

-

-

A

A

C

G

-

-

-

-

-

-

A

G

§

-

G

T

HapX

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

-

-

-

A

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

HapY

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

-

-

-

A

A

C

G

-

-

-

-

-

-

A

A

§

-

T

T

HapZ1

T

C

C

T

-

T

C

A

A

T

C

A

T

-

-

-

-

-

A

A

C

T

-

-

-

-

-

-

A

G

-

£

G

T

HapZ2

T

C

C

T

-

T

C

A

A

T

C

A

T

-

-

A

-

-

C

A

C

T

-

-

-

-

-

-

A

G

-

£

G

T

Hap1

C

C

T

T

-

-

C

G

A

C

T

G

T

-

-

A

A

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

Hap2

C

T

T

T

-

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

Hap3

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

A

-

-

C

A

T

G

-

-

-

-

-

-

A

G

§

-

T

T

Hap4

C

C

T

T

-

-

G

G

A

C

T

G

T

*

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

G

§

-

T

T

Hap5

C

C

T

T

-

-

C

G

A

C

T

G

T

*

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

A

§

-

T

T

Hap6

C

C

T

T

T

-

C

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

-

A

A

§

-

T

T

Hap7

C

C

T

T

-

-

G

G

A

C

T

G

T

-

-

A

-

-

C

A

C

G

-

-

-

-

-

‡

A

G

§

-

T

T

  1. HapA-Y and Hap1-7 are haplotypes of Scutellaria baicalensis; HapZ1-Z2 are haplotypes of Scutellaria rehderiana.
  2. *: CTGAAAAC; #: TTAGTAGTCTTTC; ¶: CTAGACTTATTTCTTTCCATTAAG;
  3. ‡: TTCCATTAAGAATAAATAAAG; §: AAAATT; £: GAAAAAAATA.
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BMC Genomic Data

ISSN: 2730-6844

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