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Figure 4 | BMC Genetics

Figure 4

From: Fine-scale detection of population-specific linkage disequilibrium using haplotype entropy in the human genome

Figure 4

Plots for the MLPH gene region and haplotype structures around the MLPH rs12465081 locus. (A) The first and second panels show the haplotype entropy and entropy difference, respectively, the same as in Figure 3. The third and fourth panels show the iHS scores for YRI and CEU populations. SNPs with |iHS| > 2.5 (corresponding to the top 1%) are shown for CEU (red) and YRI (blue). Gene structures of the region are indicated at the bottom. The gray arrowhead indicates the rs12465081 locus. (B) Haplotype structures around the MLPH rs12465081 locus (gray arrowhead) for two populations are shown. In each population panel, rows represent haplotypes and columns represent loci with color-coded nucleotides, A: red, T: blue, G: green, and C: yellow. Lines connecting the two panels indicate changes in frequency of each haplotype in the two populations.

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