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Table 3 Comparison of SNPs observed in this study with locations indentified in other studies.

From: A 2cM genome-wide scan of European Holstein cattle affected by classical BSE

   Analysis   Location Previously Peak
CHR SNP ID Method p-value Mb Observed Location Mb
1 rs29009859 sib-TDT 2.0 × 10-5 89.7 [14] 106.5
5 AAFC02012009 sib-TDT **9.9 × 10-3 30.6 No  
5 E25B16-36408-3 sib-TDT **8.8 × 10-5 66.5 No  
5 rs29012226 sib-TDT **1.9 × 10-3 67.7 No  
5 rs29024670 sib-TDT 3.0 × 10-5 112.8 [13] 107.0
6 SCAFFOLD106936_12205 sib-TDT **1.8 × 10-3 98.8 No  
10 rs29024570 Case-control *4.3 × 10-4 4.4 No  
10 rs29013631 sib-TDT **6.5 × 10-3 38.7 No  
10 rs29015623 sib-TDT 9.0 × 10-5 48.0 [13] 40.0
17 rs29021871 sib-TDT **3.0 × 10-3 44.2 No  
19 rs29027102 sib-TDT 2.0 × 10-5 62.5 [14] 53.5
20 rs29018531 sib-TDT **3.7 × 10-3 38.8 [13] 46.0
20 CART-SNP sib-TDT **1.0 × 10-4 4.9# No  
X SCAFFOLD68962_9331 sib-TDT **1.0 × 10-5 7.6 No  
X SCAFFOLD285727_12117 sib-TDT 1.0 × 10-5 85.5 [14] 112.5
  1. Sib-TDT p values are reported as unadjusted unless denoted by ** which indicates Bonferroni corrected values that pass 10,000,000 permutations. All case control p-values are reported are as unadjusted and suggested significance is denoted as *. Only SNPs with appreciable or significant p-values located within the confidence intervals of ref# [14] or within 10 cM of ref# [13] are reported here. The location determined by older bovine sequence version 2.0 is denoted by #. All other locations were determined by blast to bovine sequence version 4.0 and are reported in mega bases. The previous studies reported location in cM however for the sake of uniformity the location is reported here, based on marker positions, in Mb.