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Table 2 PLINK case-control association results of the case-control sample set.

From: A 2cM genome-wide scan of European Holstein cattle affected by classical BSE

   Location   unadjusted
SNP ID CHR bp Gene p value
rs29013431 2 15,312,400   5.99E-03
rs29012194 2 26,095,592   6.28E-03
rs29016537 2 29,654,789   1.30E-03
rs29020907 4 59,252,723 IMP2 4.97E-04
rs29024570 10 4,359,586   4.30E-04
AAFC02107025 10 21,153,203 DHRS1 4.73E-03
rs29024728 13 28,618,368   3.34E-03
PRNP08 13 47,214,453 PRNP 4.38E-03
rs29021171 14 10,106,755   3.84E-03
SCAFFOLD51887 14 43,984,153   7.25E-05*
rs29014819 15 35,713,980   7.17E-04
rs29014820 15 35,714,095   6.05E-04
rs29014821 15 35,714,113   4.66E-04
AAFC02014662 16 65,943,749   7.95E-03
AAFC02012500_1 21 11,820,092 MCTP2 1.82E-03
AAFC02012500_2 21 11,820,201 MCTP2 3.93E-03
rs29026011 21 13,254,954 LOC618464 3.00E-03
rs29019629 21 33,209,686 CSPG4 2.01E-03
rs29011202 24 18,493,192   9.08E-03
AJ496776 28 31,495,721   5.74E-03
  1. All locations determined by blast to bovine sequence version 4.0. Threshold of significance is p ≤ 1.7 × 10-5 and suggestive significance p ≤ 10-4 is denoted as *.