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Table 2 PLINK case-control association results of the case-control sample set.

From: A 2cM genome-wide scan of European Holstein cattle affected by classical BSE

  

Location

 

unadjusted

SNP ID

CHR

bp

Gene

p value

rs29013431

2

15,312,400

 

5.99E-03

rs29012194

2

26,095,592

 

6.28E-03

rs29016537

2

29,654,789

 

1.30E-03

rs29020907

4

59,252,723

IMP2

4.97E-04

rs29024570

10

4,359,586

 

4.30E-04

AAFC02107025

10

21,153,203

DHRS1

4.73E-03

rs29024728

13

28,618,368

 

3.34E-03

PRNP08

13

47,214,453

PRNP

4.38E-03

rs29021171

14

10,106,755

 

3.84E-03

SCAFFOLD51887

14

43,984,153

 

7.25E-05*

rs29014819

15

35,713,980

 

7.17E-04

rs29014820

15

35,714,095

 

6.05E-04

rs29014821

15

35,714,113

 

4.66E-04

AAFC02014662

16

65,943,749

 

7.95E-03

AAFC02012500_1

21

11,820,092

MCTP2

1.82E-03

AAFC02012500_2

21

11,820,201

MCTP2

3.93E-03

rs29026011

21

13,254,954

LOC618464

3.00E-03

rs29019629

21

33,209,686

CSPG4

2.01E-03

rs29011202

24

18,493,192

 

9.08E-03

AJ496776

28

31,495,721

 

5.74E-03

  1. All locations determined by blast to bovine sequence version 4.0. Threshold of significance is p ≤ 1.7 × 10-5 and suggestive significance p ≤ 10-4 is denoted as *.
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BMC Genomic Data

ISSN: 2730-6844

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