Skip to main content

Table 1 The results of sib-TDT model analysis using the large family sample set.

From: A 2cM genome-wide scan of European Holstein cattle affected by classical BSE

   Location   unadjusted permuted  
SNP ID CHR bp Gene p value p value Bonferroni
AAFC02065030 2 37,055,124   1.93E-08 3.61E-05 5.45E-05
rs29020694 4 90,418,076   1.87E-06 4.05E-03 5.29E-03
AAFC02132123_1 4 117,126,683 LOC100138299 9.38E-07 1.98E-03 2.65E-03
AAFC02132123_2 4 117,126,810 LOC100138299 3.38E-06 7.33E-03 9.55E-03
AAFC02012009 5 30,554,866 LOC507184 3.53E-06 7.69E-03 9.98E-03
rs29003193 5 66,501,993   3.12E-08 5.79E-05 8.82E-05
rs29012226 5 67,701,052 ANKS1B 6.63E-07 1.38E-03 1.87E-03
SCAFFOLD106936 6 98,767,642   6.35E-07 1.32E-03 1.80E-03
rs29016161 7 24,604,791   2.45E-06 5.31E-03 6.93E-03
rs29017305 9 62,946,258 BACH2 2.30E-06 4.97E-03 6.49E-03
rs29013631 10 38,725,566   2.25E-06 4.87E-03 6.36E-03
rs29022366 12 80,076,729 LOC786668 2.74E-06 5.95E-03 7.75E-03
rs29010388 14 4,145,186   4.20E-07 8.56E-04 1.19E-03
AAFC02138417 15 70,632,844   3.31E-06 7.19E-03 9.36E-03
rs29010371 16 63,558,950 FAM129A 1.06E-06 2.26E-03 3.00E-03
rs29009572 17# 37,575,810   1.29E-06 2.76E-03 3.65E-03
rs29021871 17 44,213,230   1.06E-06 2.25E-03 2.99E-03
CART 20# 4,922,252 CART 3.57E-08 6.75E-05 1.01E-04
rs29018531 20 38,814,738   1.32E-06 2.82E-03 3.72E-03
AAFC02028192 21 5,702,403 MEF2A 1.24E-07 2.49E-04 3.49E-04
rs29022862 21 12,595,937   1.85E-07 3.73E-04 5.22E-04
rs29009825 21 24,827,395   1.90E-06 4.11E-03 5.38E-03
rs29012664 22 42,415,179 FHIT 5.30E-07 1.10E-03 1.50E-03
NW_930303_1 24# 29,286,364   1.02E-07 2.05E-04 2.90E-04
NW_930303_2 24# 29,286,314   3.06E-07 6.17E-04 8.64E-04
SCAFFOLD176855 28 26,871,628 SLC29A3 1.03E-06 2.18E-03 2.90E-03
SCAFFOLD68962 X 7,641,750   3.15E-06 6.86 E-03 8.91E-03
  1. Locations were determined by blast to bovine sequence version 4.0. All other locations denoted by # were either determined from bovine sequence version 2.0, 4.1 or the Maryland sequence assembly. Permuted p values reported here are from a 10,000,000 genome-wide SNP permutation.