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Table 1 All QTL located in this study

From: Quantitative trait loci for variation in immune response to a Foot-and-Mouth Disease virus peptide

Chr1 Trait2 cM3 F4 a5 d5 Var%6
2 IgG1_week_10 38 5.60 -0.21** 0.26** 5.71
3 IgG2_week_2 58 5.93 0.66** 0.40 6.03
4 IgG1_week_1 31 5.35 -0.63** 0.34 5.46
4 IgG1_week_8 20 5.17 0.12 0.17** 1.18
4 IgG1_week_10 27 4.92 0.23 -0.47* 5.05
4 IgG1_AUC 28 6.37* 0.11 -0.43* 6.64
4 SI_FMDV_Week_0 67 4.79 0.00 -0.14** 4.92
5 SI_CA_Week_0 68 8.10* -0.13* 0.24** 8.05
5 SI_CA_Week_0 100 5.76 0.22** -0.14 6.11
5 SI_CA_Week_10 76 5.26 -0.05 0.23** 5.38
5 SI_CA_10 ug_AUC 69 5.89 -0.06 0.17** 6.04
6 SI_CA_Week_0 30 8.69** 0.26*** 0.08 8.59
6 SI_FMDV_Week_8 59 6.49 0.14** -0.08 6.56
6 SI_FMDV_Week_8 133 7.35* 0.04 -0.20*** 7.51
6 SI_FMDV_Week_10 3 6.61 0.12** -0.15* 6.67
6 SI_FMDV_AUC 2 7.91* 0.10*** -0.07 7.96
6 SI_FMDV_AUC 133 6.21 0.03 -0.13** 6.56
7 IgG2_week_8 0 6.24 -0.85*** 0.13 6.58
7 SI_CA_Week_10 0 4.89 0.05 0.28** 5.02
7 SI_FMDV_Week_4 54 5.45 -0.11** -0.09 5.62
9 IgG1_week_0 40 5.29 -0.2948* 0.35 5.41
9 SI_FMDV_Week_10 63 4.92 0.05 -0.23** 5.05
11 IgG1_week_0 0 5.26 0.25 -0.61* 5.38
12 IgG2_week_8 17 5.44 -0.03 1.24*** 5.56
13 IgG1_week_1 0 5.08 0.04 -0.54** 5.20
14 IgG2_week_0 2 4.85 0.12 -0.28** 4.98
15 IgG2_week_8 13 5.16 -0.08 1.03** 5.28
15 IgG2_AUC 27 5.39 -0.08 0.67** 5.51
16 IgG2_week_2 76 6.51 -0.71*** -0.16 6.58
16 SI_FMDV_AUC 64 4.42 -0.06* -0.07* 4.61
18 SI_CA_Week_10 22 7.02* -0.20*** 0.10 7.06
18 IgG2_week_1 57 5.23 -0.10 0.34** 5.40
19 IgG2_week_2 28 4.93 -0.50* -0.62* 5.06
19 IgG2_week_4 34 5.64 -0.73*** -0.32 5.75
19 IgG2_week_8 50 5.28 -0.81** -0.25 5.63
19 SI_CA_Week_8 32 8.57* 0.25*** -0.07 8.48
19 SI_CA_Week_10 32 4.54 0.15* -0.13 4.67
19 SI_CA_10 ug_AUC 28 4.42 0.13** -0.01 4.61
20 IgG1_week_2 28 4.74 -0.03 0.48** 4.87
20 IgG1_week_4 36 7.86* 0.20** 0.35** 7.83
20 IgG1_week_8 9 6.49* 0.19 0.64** 6.56
20 IgG1_week_10 23 5.37 0.09 0.38** 5.48
20 IgG1_AUC 20 10.07*** 0.12 0.39*** 9.82
20 IgG2_week_4 32 7.48 0.52** 0.65* 7.48
20 IgG2_week_8 25 8.46 0.76** 0.87* 8.38
20 IgG2_week_10 31 6.23 0.33 0.82** 6.31
20 IgG2_AUC 31 8.5* 0.40** 0.67** 8.41
20 SI_FMDV_Week_0 61 7.95* 0.05 -0.18*** 7.92
21 IgG1_week_2 69 4.96 -0.22* 0.38* 5.09
21 SI_CA_10 ug_AUC 84 4.10 -0.14** -0.01 4.28
23 IgG1_week_0 78 5.11 -0.19 -0.54** 5.24
23 IgG1_week_1 65 5.83 -0.13 -0.87*** 5.92
23 IgG1_week_2 39 4.16 0.37 -0.53 4.31
23 IgG1_week_10 18 5.25 0.37** 0.03 5.37
23 IgG1_AUC 18 5.34 0.29** 0.06 5.46
23 IgG2_week_4 0 5.45 0.63** -0.18 5.57
23 IgG2_week_8 5 5.85 0.88*** -0.18 5.94
23 IgG2_week_10 33 4.08 1.02** 0.77 4.23
23 IgG2_AUC 6 6.61* 0.66*** -0.18 6.67
24 IgG1_week_8 35 7.83** 0.58*** 0.32 7.80
24 IgG1_week_10 33 4.18 0.27** 0.06 4.32
24 IgG1_AUC 33 6.23 0.25*** 0.12 6.31
24 IgG2_week_10 21 5.09 0.69** 0.61 5.32
24 SI_CA_Week_4 34 5.46 -0.05 0.28** 5.63
25 IgG1_week_0 0 4.48 0.34* 0.28 4.62
25 IgG1_week_1 0 4.88 0.29* 0.35* 5.01
25 IgG1_week_2 33 4.42 0.05 -0.35** 4.66
25 IgG2_week_1 15 4.48 0.18** -0.11 4.62
25 IgG2_week_2 34 4.65 -0.14 -0.73** 4.78
25 IgG2_week_4 34 4.85 -0.14 -0.70** 4.98
25 IgG2_AUC 34 5.28 -0.04 -0.62** 5.40
25 SI_CA_Week_10 17 5.79 -0.11* 0.19** 5.89
26 IgG1_week_1 21 4.90 -0.30* 0.35 5.25
27 IgG2_week_4 7 4.61 -0.57** -0.33 4.75
29 SI_CA_Week_0 0 5.34 0.15** -0.11 5.69
29 SI_FMDV_Week_8 7 4.90 -0.10* 0.12 5.03
29 SI_FMDV_Week_10 0 4.38 -0.11** 0.08 4.61
  1. 1. Chr: the chromosome number of the QTL. Underlined if 2 QTL model.
  2. 2. Trait: each trait is shown as follows: trait type (IgG1; IgG2; SI_FMDV = T cell proliferation to the FMDV peptide; SI_CA = T cell proliferation to Concanavalin A), followed by week post immunisation.
  3. 3. cM: the position the QTL is on the chromosome, in centiMorgans.
  4. 4. F: the F-statistic for each QTL. Significance level: all are at least 5% chromosome wide, * = p < 1% chromosome wide, **= p < 5% genome wide and ***= p < 1% genome wide.
  5. 5. "a" and "d" are the additive and dominance effect, respectively, of each QTL, * = p < 5%, **= p < 1% and ***= p < 0.01%.
  6. 6. Var%: the phenotypic variance explained by the QTL.
  7. Clusters of related traits have been boxed, 6 in total