Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

BMC Genomic Data

Table 1 An overview of the chicken populations population

population label	type/population	origin	N indiv.	GGA1 H_obs	GGA2 H_obs	GGA26 H_obs	GGA27 H_obs	Anc. Freq.
E2	white egg layer	Hendrix Genetics	54	0.11	0.09	0.04	0.14	0.66
B2	brown egg layer	Hendrix Genetics	62	0.18	0.17	0.21	0.28	0.68
E3	male broiler	Hendrix Genetics	61	0.23	0.23	0.20	0.3	0.68
E5	female broiler (closed)	Hendrix Genetics	57	0.24	0.19	0.14	0.17	0.68
A3	female broiler (open)	Hendrix Genetics	58	0.24	0.25	0.25	0.28	0.68
AvDiv_101	Red Jungle Fowl (G. g. spadiceus)	Thailand	29	0.25	0.28	0.25	0.27	0.71
AvDiv_9	Owl Bearded	The Netherlands	26	0.21	0.24	0.27	0.22	0.65
AvDiv_10	Frisian Fowl	The Netherlands	24	0.20	0.21	0.25	0.28	0.66
	G. lafayetii (CJF)	Sri Lanka	7	0.02	0.03	0.03	0.04	1.00

An overview of the populations surveyed. Population label refers to the names of the same population in other studies: the wild chicken population, Frisian Fowl, and Owl Bearded were part of the AvianDiv project [18]. The E2, E5 and E3 lines have been previously studied by Aerts et al. (2007). Indicated are the number of specimens used (N indiv), observed heterozygosity per chromosome (H_obs), and overall ancestral allele frequencies (anc. Freq.).

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