A: Neighbor Joining tree based on genetic distances between population derived from all markers considered in this study. B: Difference between haplotype sharing based on microchromosomal (horizontal axis) versus sharing based on macrochromosomal (vertical axis) haplotypes. Sharing was calculated as the average over a sliding window of window size of ~30 kb. Haplotype sharing is almost consistently lower in microchromosomes. C: Difference in genetic distances based on microchromosomal (horizontal axis) and macrochromosomal (vertical axis) genotypes. Genetic distances are almost consistently higher in microchromosomes.