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Table 1 Genetic variability at 25 microsatellites for 37 leopards (blood samples)

From: A panel of microsatellites to individually identify leopards and its application to leopard monitoring in human dominated landscapes

Locus

Repeat nature

Dye

Product size range

(bp)

Ta

No. of alleles

He

Ho

PID(unrelated) cumulative

PID(sibs) cumulative

Amplification success (%) for faeces

Allelic dropout

(%)

Multiplex sets for PCR

FCA126*$

Di

6-FAM

134 - 154

57.0

10

0.85

0.74

3.975E-02

3.356E-01

94%

0

Set 1

FCA279*$

Di

NED

81 - 105

57.0

11

0.83

0.68

1.882E-03

1.156E-01

88%

1.5

 

FCA304*$

Di

NED

105 - 129

58.0

8

0.80

0.37

1.255E-04

4.229E-02

88%

0

Single reaction

FCA052*$

Di

6-FAM

107 - 121

55.0

8

0.74

0.50

8.721E-08

2.523E-03

92.1%

1.5

Set 2

FCA090*$

Di

HEX

104 - 116

55.0

6

0.74

0.71

8.819E-10

4.058E-04

77%

3

 

FCA672*$

Di

6-FAM

82 - 100

54.0

8

0.74

0.68

8.564E-12

6.655E-05

92.1%

0

Single reaction

FCA230*$

Di

HEX

98 - 106

52.0

5

0.70

0.71

1.572E-15

2.098E-06

90%

6

Single reaction

FCA309*$

Di

6-FAM

92 - 106

55.0

6

0.67

0.58

8.754E-19

8.788E-08

94%

0

Single reaction

FCA205*

Di

NED

89 - 113

55.5

9

0.76

0.71

1.108E-05

1.646E-02

22%

3

 

FCA628*

Di

HEX

98 - 110

58.0

7

0.73

0.79

8.045E-11

1.638E-04

48%

9

 

F42

Tetra

NED

226 - 250

55.4

7

0.77

0.68

9.204E-07

6.404E-03

   

FCA391

Tetra

HEX

190 - 218

56.0

8

0.76

0.79

8.920E-09

1.006E-03

   

6HDZ056

Di

HEX

169 - 177

58.0

5

0.63

0.53

9.242E-13

2.709E-05

   

F115†

Tetra

HEX

190 - 206

55.5

5

0.75

0.32

9.552E-14

1.106E-05

   

FCA506

Di

6-FAM

192 - 226

54.0

12

0.72

0.68

1.285E-14

4.786E-06

   

F41

Tetra

NED

123 - 139

56.0

5

0.68

0.68

2.381E-16

9.303E-07

   

6HDZ170

Di

6-FAM

212 - 226

60.0

6

0.69

0.61

3.581E-17

4.152E-07

   

FCA001

Di

6-FAM

139 - 163

54.0

10

0.68

0.66

5.968E-18

1.897E-07

   

FCA453

Tetra

6-FAM

181-201

59.0

4

0.64

0.55

1.643E-19

4.181E-08

   

6HDZ007

Di

HEX

202 - 226

65.0

10

0.65

0.50

3.022E-20

2.018E-08

   

E21B

Di

6-FAM

157 - 167

60.0

4

0.58

0.58

7.733E-21

1.063E-08

   

FCA232

Di

6-FAM

113 - 123

55.0

5

0.55

0.71

2.046E-21

5.749E-09

   

FCA441

Tetra

HEX

137 - 153

50.0

5

0.53

0.50

5.034E-22

3.129E-09

   

FCA164

Di

6-FAM

80 - 90

58.0

4

0.10

0.05

4.073E-22

2.821E-09

   

FCA170

Di

HEX

84 - 94

55.0

4

0.10

0.05

3.296E-22

2.544E-09

   
  1. * Loci tested for faecal DNA samples
  2. $ Loci used for individual identification
  3. † Deviation from Hardy-Weinberg equilibrium