Sample Size | Disease Allele Frequency | Model Type | ||
---|---|---|---|---|
 |  | hapcc | htr | HAPGLM |
50 | q = 0.1 | 0.947 | 0.947 | 0.947 |
 | q = 0.3 | 0.866 | 0.907 | 0.968 |
 | q = 0.5 | 0.666 | 0.391 | 0.596 |
100 | q = 0.1 | 0.977 | 0.971 | 0.952 |
 | q = 0.3 | 0.963 | 0.927 | 0.941 |
 | q = 0.5 | 0.834 | 0.728 | 0.917 |
200 | q = 0.1 | 0.980 | 0.980 | 0.968 |
 | q = 0.3 | 0.981 | 0.981 | 0.968 |
 | q = 0.5 | 0.961 | 0.912 | 0.954 |
400 | q = 0.1 | 0.967 | 0.981 | 0.948 |
 | q = 0.3 | 0.981 | 0.983 | 0.974 |
 | q = 0.5 | 0.934 | 0.925 | 0.967 |