Identification of a two-marker-haplotype on Bos taurus autosome 18 associated with somatic cell score in German Holstein cattle

Table 5 Association analyses of maternally inherited two-marker-haplotypes with SCS

Interval	Haplotype	Haplotype Frequencies	Nominal p-value	Effect Estimates
9	G - 113	0.3924	0.555	-0.016
9	G - 117	0.0799	0.422	0.038
12 - 13	249 - G	0.0409	0.027*	0.142
12 - 13	253 - A	0.0474	0.207	-0.073
12 - 13	255 - A	0.4037	0.057	-0.048

Summary of results from an association analyses for maternally inherited two-marker-haplotypes based on a model (1) including a fixed two-marker-haplotype effect and a random polygenic effect. Individual two-marker-haplotypes were compared to all other maternally inherited haplotypes in the data set. Haplotype frequencies were determined by direct counting.

ISSN: 2730-6844