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Table 3 Association analyses of marker genotypes with SCS in six German Holstein halfsib families

From: Identification of a two-marker-haplotype on Bos taurus autosome 18 associated with somatic cell score in German Holstein cattle

Marker/SNP

Position in cM

Nominal p-value

CDH1_c.2102C>T

52

0.121

HAMP_c.86+430G>A

69.7

0.132

HAMP_c.366+109G>A

69.75

0.416

BMS833

73.8

0.004*

BB710

76.3

0.216

PVRL2_c.-1268G>C

78.9

0.325

PVRL2_c.392G>A

79.1

0.017

CALM3_c.3+1678C>T

81.15

0.055

CALM3_c.3+1795C>T

81.25

0.223

  1. Summary of results from association analyses for marker genotypes based on a mixed model (1) including a fixed genotype effect and a random polygenic effect. The experiment-wise 5% significance level is pexp = 0.0057.
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BMC Genomic Data

ISSN: 2730-6844

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