From: Single-feature polymorphism discovery by computing probe affinity shape powers
 | Methods | ||||
---|---|---|---|---|---|
 | PASP | PILM | PILM | PAOP | PAOP |
 | probe affinity, shape power | probe intensity, linear model | probe intensity, linear model | probe affinity, outlier score | probe affinity, outlier score |
cutoff | weight2.5 | D3.0 FDR0%2 | D2.0 FDR0.1%1 | os pct0.152 | os pct0.051 |
polymorphisms | 284/401 | 254/401 | 295/401 | 233/401 | 106/401 |
non-polymorphisms | 48/2200 | 87/2200 | 155/2200 | 37/2200 | 16/2200 |
detected SFPs | 9603 | 7150 | 10504 | 6820 | 2193 |
TPR (%) | 70.82 | 63.34 | 73.56 | 58.10 | 26.43 |
FPR (%) | 2.18 | 3.95 | 7.05 | 1.68 | 0.73 |
FDR (%) | 14.46 | 25.51 | 34.44 | 13.70 | 13.11 |
compScore | 1.00 | 0.21 | 0.15 | 0.80 | 0.28 |