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Table 6 Significant results for SNP associations in Duroc and Norwegian Landrace.

From: Association between SNPs within candidate genes and compounds related to boar taint and reproduction

Trait

SNP

LRT D

LRT NL

% of tot.var. D

% of tot.var. NL

Favourable allele

ln(Androstenone fat)

NGFIB_in4

5.99

 

5.1

 

A

 

CTNND1_3'UTRa

6.02

 

16.3

 

T

 

CYP2D6_1276(ex7)

6.35

 

5.6

 

C

 

CYP2C49_1083(ex7)

7.33

 

12.3

 

C

ln(Androstenone plasma)

BAP1_3'UTRb

 

5.40

 

1.3

A

 

HYAL2_583(ex1)

 

5.53

 

1.6

A

 

BAP1_3'UTRa

 

6.45

 

2.0

A

 

SRD5A2_3'UTRd

 

8.80

 

2.1

T

ln(Indole)

CYP21_in9

8.52

 

6.3

 

A

 

CYP21_in6b

9.36

 

7.3

 

C

 

CYP21_in8b

10.4

 

6.4

 

G

 

CYP2E1_1422(ex9)

 

28.3

 

4.5

C

 

CYP2E1_1423(ex9)

25.4

39.5

6.5

4.9

A

 

CYP2E1_in1a

11.9

19.6

7.5

3.1

G

 

CYP2E1_in1b

24.8

35.4

7.0

4.8

DEL

 

CYP2E1_in6

26.4

31.8

7.4

4.5

A

ln(Skatole)

CYP21_in9

7.86

 

12.4

 

A

 

CYP21_in6b

7.20

 

13.4

 

C

 

CYP2E1_1423(ex9)

6.81

12.0

2.5

3.0

A

 

CYP2E1_in1b

8.38

8.80

3.4

2.1

DEL

 

CYP2E1_in6

7.79

9.10

3.1

2.2

A

ln(Estrone sulphate)

AKR1C3_in4b

5.92

 

1.5

 

T

 

AKR1C3_in4c

6.57

 

1.9

 

T

 

AK1_483(ex5)

13.8

 

16.2

 

T

 

SRD5A2_3'UTRd

 

6.30

 

1.3

C

ln(17β-estradiol)

AKR1C3_in4c

5.60

 

2.0

 

T

 

PPP1R1A_291(ex5)

 

5.71

 

1.3

G

ln(Testosterone)

HYAL2_583(ex1)

 

6.28

 

1.5

C

 

BAP1_3'UTRa

 

6.80

 

1.8

T

  1. Significance level is presented (LRT) together with percentage of the total phenotypic variance explained by the SNP and the favourable allele. DEL = deletion.
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BMC Genomic Data

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