Table 6 Significant results for SNP associations in Duroc and Norwegian Landrace.
From: Association between SNPs within candidate genes and compounds related to boar taint and reproduction
| Trait | SNP | LRT D | LRT NL | % of tot.var. D | % of tot.var. NL | Favourable allele |
|---|---|---|---|---|---|---|
| ln(Androstenone fat) | NGFIB_in4 | 5.99 | 5.1 | A | ||
| CTNND1_3'UTRa | 6.02 | 16.3 | T | |||
| CYP2D6_1276(ex7) | 6.35 | 5.6 | C | |||
| CYP2C49_1083(ex7) | 7.33 | 12.3 | C | |||
| ln(Androstenone plasma) | BAP1_3'UTRb | 5.40 | 1.3 | A | ||
| HYAL2_583(ex1) | 5.53 | 1.6 | A | |||
| BAP1_3'UTRa | 6.45 | 2.0 | A | |||
| SRD5A2_3'UTRd | 8.80 | 2.1 | T | |||
| ln(Indole) | CYP21_in9 | 8.52 | 6.3 | A | ||
| CYP21_in6b | 9.36 | 7.3 | C | |||
| CYP21_in8b | 10.4 | 6.4 | G | |||
| CYP2E1_1422(ex9) | 28.3 | 4.5 | C | |||
| CYP2E1_1423(ex9) | 25.4 | 39.5 | 6.5 | 4.9 | A | |
| CYP2E1_in1a | 11.9 | 19.6 | 7.5 | 3.1 | G | |
| CYP2E1_in1b | 24.8 | 35.4 | 7.0 | 4.8 | DEL | |
| CYP2E1_in6 | 26.4 | 31.8 | 7.4 | 4.5 | A | |
| ln(Skatole) | CYP21_in9 | 7.86 | 12.4 | A | ||
| CYP21_in6b | 7.20 | 13.4 | C | |||
| CYP2E1_1423(ex9) | 6.81 | 12.0 | 2.5 | 3.0 | A | |
| CYP2E1_in1b | 8.38 | 8.80 | 3.4 | 2.1 | DEL | |
| CYP2E1_in6 | 7.79 | 9.10 | 3.1 | 2.2 | A | |
| ln(Estrone sulphate) | AKR1C3_in4b | 5.92 | 1.5 | T | ||
| AKR1C3_in4c | 6.57 | 1.9 | T | |||
| AK1_483(ex5) | 13.8 | 16.2 | T | |||
| SRD5A2_3'UTRd | 6.30 | 1.3 | C | |||
| ln(17β-estradiol) | AKR1C3_in4c | 5.60 | 2.0 | T | ||
| PPP1R1A_291(ex5) | 5.71 | 1.3 | G | |||
| ln(Testosterone) | HYAL2_583(ex1) | 6.28 | 1.5 | C | ||
| BAP1_3'UTRa | 6.80 | 1.8 | T |
