Genetic analysis of local Vietnamese chickens provides evidence of gene flow from wild to domestic populations

Berthouly, C; Leroy, G; Van, T Nhu; Thanh, H Hoang; Bed'Hom, B; Nguyen, B Trong; Vu Chi, C; Monicat, F; Tixier-Boichard, M; Verrier, E; Maillard, J-C; Rognon, X

doi:10.1186/1471-2156-10-1

BMC Genomic Data

Table 1 Summary of genetic diversity measures across wild and domestic populations

From: Genetic analysis of local Vietnamese chickens provides evidence of gene flow from wild to domestic populations

Code	Breed name	Sample Size	H_Exp	H_Obs	A	F_IS
BS_LD	Broiler sire Line D	30	0.46	0.45	2.5	0.01
BS_LC	Broiler Sire Line C	25	0.47	0.49	2.2	-0.03
BD_LB	Broiler dam Line B	25	0.47	0.47	1.6	0.00
BE_LC	Brown-egg Layer C	25	0.41	0.36	2.2	0.11
WE_LA	White-egg Layer A	25	0.27	0.27	2.1	-0.02
Gg1	G. g. spadiceus. Thailand*	16	0.60	0.58	2.2	0.05
Gg2	G. g.gallus. Thailand*	15	0.62	0.66	2.4	-0.06
Gg3	G. g. gallus. Vietnam	6	0.57	0.70	2.7	-0.27
HT	Hua-Tung. Taiwan	45	0.55	0.57	2.8	-0.02
JC	Ju-Chi. Taiwan	48	0.40	0.42	2.0	-0.05
KM	Quemoy. Taiwan	47	0.49	0.47	2.3	0.04
HY	Hsin-Yi. Taiwan	47	0.50	0.51	2.1	-0.02
SK	Shek-Ki. China	46	0.44	0.40	2.0	0.10
NG	Nagoya. Japan	48	0.42	0.43	2.2	-0.02
HG	Ha Giang. Vietnam (mean values)		0.62	0.55	2.9	0.12
Ha Giang (HG) detailed for the 30 communes
HG1	Lung-Pu	36	0.63	0.49	2.9	0.22
HG2	Ma-Le	9	0.61	0.54	2.8	0.13
HG4	Lung-Cu	44	0.62	0.52	2.9	0.17
HG7	Thai Phin Tung	6	0.70	0.62	3.3	0.12
HG16	Pho-Cao	39	0.57	0.52	2.7	0.08
HG20	Bach-Dich	23	0.65	0.59	3.0	0.08
HG25	Na-Khe	22	0.57	0.49	2.7	0.15
HG40	Tat-Nga	26	0.69	0.57	3.2	0.18
HG48	Khau-Vai	47	0.61	0.53	2.6	0.13
HG49	Tung-Vai	52	0.61	0.55	2.8	0.09
HG56	Quyet-Tien	24	0.58	0.52	2.8	0.11
HG61	Lung-Ho	37	0.58	0.54	2.7	0.08
HG65	Du-Gia	9	0.68	0.59	2.7	0.14
HG72	Ngoc-Duong	16	0.64	0.59	3.1	0.07
HG75	Giap-Trung	52	0.61	0.53	2.9	0.14
HG85	Po-Lo	90	0.63	0.55	2.8	0.13
HG88	Minh-Ngoc	32	0.64	0.57	2.9	0.11
HG91	Nan-Xin	64	0.61	0.56	3.0	0.08
HG95	Phu-Linh	32	0.61	0.51	2.8	0.17
HG103	Chi-Ca	88	0.65	0.58	2.8	0.10
HG108	Thuong-Son	16	0.62	0.53	3.0	0.14
HG110	Po Ly Ngai	49	0.61	0.56	2.9	0.09
HG113	Yen-Cuong	52	0.63	0.58	2.8	0.06
HG114	San Sa Ho	44	0.62	0.58	2.9	0.06
HG145	Quang-Nguyen	25	0.62	0.55	2.8	0.10
HG146	Trung Thanh	14	0.61	0.54	2.8	0.13
HG157	Tan-Nam	14	0.65	0.57	2.8	0.12
HG169	Quang-Minh	15	0.62	0.54	3.0	0.15
HG179	Xuan-Giang	88	0.64	0.55	2.9	0.14
HG184	Vinh-Phuc	17	0.60	0.51	2.9	0.15

A: allelic richness; * pooled as one population in [8]

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